Curator Dashboard

Vevo LAB offers basic and advanced tools for visualizing, quantifying and characterizing disease progression from ultrasound images obtained on a Vevo system

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• RRID
• 1 year ago - submitted by Nahla Ibrahim

GEfetch2R is an R package dedicated to facilitating researchers to access and explore existing scRNA-seq data from various public repositories. As a data downloader, GEfetch2R supports downloading the most diverse scRNA-seq data types, including raw data (SRA and ENA), count matrices (GEO, UCSC Cell Browser, and PanglaoDB), and processed objects (Zenodo, CELLxGENE, and HCA). Besides the data download ability, GEfetch2R can process the downloaded data, load output/downloaded count matrices and annotations to R (SeuratObject/DESeqDataSet), extract a subset of the SeuratObject based on cell metadata and genes, and merge multiple SeuratObjects if applicable. Furthermore, to enable the integration of scRNA-seq data and the interoperability between different analysis tools, GEfetch2R provides the most comprehensive format conversions between different scRNA-seq objects, including SeuratObject, AnnData, SingleCellExperiment, CellDataSet/cell_data_set, and loom. In particular, GEfetch2R benchmarks the format conversion tools for converting between SeuratObject/SingleCellExperiment and AnnData. In addition to fetching scRNA-seq data, GEfetch2R can also be used to download raw data (SRA and ENA) and count matrices (GEO) of bulk RNA-seq, process the downloaded data, and load output/downloaded count matrices to R (DESeqDataSet).

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• 1 year ago - submitted by Yabing Song

vicky test Viničná 3

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• 1 year ago - submitted by Vicky Guo

vicky test Viničná 3

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• RRID
• 1 year ago - submitted by Vicky Guo

vicky test Viničná 2

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• 1 year ago - submitted by Vicky Guo

vicky test Viničná

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• dkNET
• 1 year ago - submitted by Vicky Guo

The python package 'DeepAnnotation' can be used to perform genomic selection (GS), which is a promising breeding strategy for agricultural breeding. DeepAnnotation predicts phenotypes from comprehensive multi-omics functional annotations with interpretable deep learning framework.

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• 1 year ago - submitted by ma wenlong

Phsaed Intraspecies Sample Anomalies Detection tool

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• 1 year ago - submitted by zhantian xu

VAHTS DNA Clean Beads Vazyme, N411 is based on SPRI Solid Phase Reverse Immobilization and is applicable for DNA purification and fragment size selection during the preparation of next generation sequencing library.

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• RRID
• 1 year ago - submitted by Zhen Liu

VAHTS DNA Clean Beads Vazyme, N411 is based on SPRI Solid Phase Reverse Immobilization and is applicable for DNA purification and fragment size selection during the preparation of next generation sequencing library.

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• RRID
• 1 year ago - submitted by Zhen Liu

Qubit dsDNA HS Assay Kit Invitrogen Q32854.

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• RRID
• 1 year ago - submitted by Zhen Liu

KAPA HiFi Hotstart Ready Mix Roche KK2602. KAPA HiFi DNA Polymerase is extensively used in next-generation sequencing NGS library amplification.

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• 1 year ago - submitted by Zhen Liu

Exonuclease I NEB M0293L. Thermolabile Exonuclease I

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• 1 year ago - submitted by Zhen Liu

RNase inhibitor NEB M0314L. RNase Inhibitor, Murine, specifically inhibits RNases A, B and C.

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• RRID
• 1 year ago - submitted by Zhen Liu

Pepsin Sigma P7000

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• RRID
• 1 year ago - submitted by Zhen Liu

SSC Ambion AM9770

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• RRID
• 1 year ago - submitted by Zhen Liu

ssDNA reagent Invitrogen Q10212

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• RRID
• 1 year ago - submitted by Zhen Liu

99.9 percentage, suitable for immunofluorescence, HPLC

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• RRID
• 1 year ago - submitted by Zhen Liu

VAHTS DNA Clean Beads Vazyme, N411 is based on Solid Phase Reverse Immobilization and is applicable for DNA purification and fragment size selection during the preparation of next generation sequencing library.

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• RRID
• 1 year ago - submitted by Zhen Liu

Tissue-Tek O.C.T. Compound is used to quickly embed fresh tissue specimens for frozen sections using a cryostat. Tissue-Tek O.C.T. Compound is a formulation of clear, water-soluble glycols and resins, providing a solid matrix to encapsulate tissue specimens and bond to the Specimen Holder for consistent sectioning in a cryostat working temperature of -10 degrees celsius and below.

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• 1 year ago - submitted by Zhen Liu