Curator Dashboard

Software tool for estimating genome copy numbers from high throughput DNA sequencing data. Allele-specific copy number and clonal heterogeneity analysis tool for high-throughput DNA sequencing. Used to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

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• 1 year ago - by Anonymous

Software tool for detecting somatic point mutations in high throughput DNA sequencing data of tumors. Used for modeling evolution of allelic composition of tumor and normal tissue at each reference base. Adopts sample-specific error model to depict inter-tumor heterogeneity, which greatly improves overall accuracy.

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• 1 year ago - by Anonymous

Facility offers conventional as well as molecular cytogenetic services including karyotyping, analysis of genomic instability, fluorescence in situ hybridization, telomere analysis, Spectral Karyotyping, species identification, inter-species and intra-species cell line contamination, STR fingerprinting service for cell line authentication, mycoplasma contamination testing and distribution of cell lines.

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• 1 year ago - by Anonymous

Genomics core facility with goal to use instrumentation and innovative technical expertise in order to provide investigators with genomic data from comprehensive range of genomic services in timely manner. Services include Next-Generation Sequencing, Sanger Sequencing Single Cell Sequencing, Microarray Services, Fluorescent Fragment Length Analysis, nanoString nCounter Analysis, Bionano Optical Genome Mapping, Spatial Transcriptomics, Nanopore Sequencing.

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• 1 year ago - by Anonymous

Software workflow that converts unprocessed reads into annotated binding sites using improved statistical framework. Used for analysis of CLIP-seq data and to process CLIP data from fastq files.

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• 1 year ago - submitted by GUNJAN SHARMA

Web isotopologue analysis tool for metabolomics experiment. Used to compute tracer analysis. Transforms raw mass spec AUC values into the percent representation of each isotopologue measured.

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• 1 year ago - submitted by GUNJAN SHARMA

Software platform-independent application written in Java and R that provides both Graphical User Inteface and command-line interface to facilitate quality control of alignment sequencing data and its derivatives like feature counts. Used for advanced multi-sample quality control for high-throughput sequencing data.

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• 1 year ago - submitted by Ekaterina Serebrovskaya

Core provides development services for innovative hardware and software scientific equipment.

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• 1 year ago - by Anonymous

Facility for computed tomography (3D) imaging of objects in the Field Museum and part of the Museum’s Core Lab Group. Includes two North Star Imaging (NSI) XCT scanners. The larger of the two scanners is an X5000 with a dual tube setup: one 450kV mini-focus tube, and one 225kV micro-focus tube. This scanner can house samples up to 500lbs and 1.2m in longest dimension, and has excellent penetrating power for imaging dense samples like fossils and meteorites. The smaller scanner is an X25 with a 150kV Hamamatsu tube, which is excellent for imaging smaller and/or less dense samples in extremely high resolution, such as small animal skeletons. In addition to the scanners, the lab is equipped with two high-powered computers for post-scan data processing. Available software includes NSI’s suite of inspection and reconstruction software, VG Studio, ORS Dragonfly, 3DSlicer, Meshlab, and Blender.

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• 1 year ago - submitted by Edyta Vieth

Software repository is part of the open Metadata Initiative for Neuroscience Data Structures (openMINDS). It extends openMINDS, by providing metadata schemas for in-depth descriptions of stimuli and stimulation protocols in neuroscience.

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• 1 year ago - submitted by Lyuba Zehl

Software repository is part of the open Metadata Initiative for Neuroscience Data Structures (openMINDS). It extends openMINDS, by providing metadata schemas for in-depth descriptions of specimen preparations (surgery, tissue slicing, etc.).

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• 1 year ago - submitted by Lyuba Zehl

Software repository is part of the open Metadata Initiative for Neuroscience Data Structures (openMINDS). It extends openMINDS, by providing metadata schemas for representing publications in neuroscience, including interactive publications such as Live Papers. It includes schemas for articles, books, preprints, blog posts, live papers, etc., linked to other openMINDS entities such as Datasets. The schemas closely follow those in Schema.org but extend them for improved interoperability with openMINDS.

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• 1 year ago - submitted by Lyuba Zehl

Software repository is part of the open Metadata Initiative for Neuroscience Data Structures (openMINDS). It extends openMINDS, by providing metadata schemas for in-depth descriptions of electrophysiology experiments.

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• 1 year ago - submitted by Lyuba Zehl

Software repository is part of the open Metadata Initiative for Neuroscience Data Structures (openMINDS). It extends openMINDS core, by providing schema-templates for adding metadata for simulation, data analysis and visualization.

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• 1 year ago - submitted by Lyuba Zehl

Software repository hosts one of the metadata models of the openMINDS metadata framework. It defines modular metadata schemas for describing chemical substances and mixtures.

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• 1 year ago - submitted by Lyuba Zehl

Software repository is part of open Metadata Initiative for Neuroscience Data Structures (openMINDS). It contains the schema-templates as well as corresponding terminologies (as JSON-LDs) for all terms that are defined and maintained centrally in this repository. Where applicable, the defined terms are connected to a matching ontological term. Schemas of openMINDS_core as well as openMINDS_SANDS reference to these controlled terms.

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• 1 year ago - submitted by Lyuba Zehl

Software repository hosts one of metadata models of openMINDS metadata framework. It defines modular metadata schemas for describing general origin, location and content of neuroscience research products.

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• 1 year ago - submitted by Lyuba Zehl

Software R client for the Aggregate Content of ClinicalTrials.gov (AACT) database API.

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• 1 year ago - by Anonymous

Software R package also called event history analysis in social science, or reliability analysis in engineering, deals with time until occurrence of event of interest. However, this failure time may not be observed within the relevant time period, producing so-called censored observations. Used for analysis of time to event data.

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• 1 year ago - by Anonymous

Registered charity and company limited by guarantee with mission to conserve birds, their habitats and global biodiversity, working with people toward sustainability in the use of natural resources. Registered in England. Provides bird species range map.

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• 1 year ago - by Anonymous