Curator Dashboard

Software application provides dataset of all student-system interactions collected over 2 years by Santa, multi-platform AI tutoring service with more than 780K users in Korea available through Android, iOS and web.

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• 1 year ago - by Anonymous

Software fast, reference-independent, allele-aware scaffolding tool based on Hi-C data. Allele-aware scaffolding tool that uses Hi-C data to scaffold haplotype-phased genome assemblies into chromosome-scale pseudomolecules.

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• 1 year ago - submitted by Zhenzhu Li

Software tool as trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

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• 1 year ago - submitted by Zhenzhu Li

Software tool as implicit or explicit water model based docking with Autodock vina engine, supporting pharmacophore /position constrained docking.Facilitates drug design with support for explicit or implicit waters, pharmacophore or position-constrained docking, and external torsion parameters (akin to amber/gaff/charmm force fields). Water Model supported protein-ligand docking with Autodock Vina engine.

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• 1 year ago - submitted by Zhenzhu Li

Software package to analyze amino acid content and hydrophobicity profile of given set of protein sequences in fasta file. Used for analysis of amino acid composition and hydrophobicity of test sequences from fasta files.

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• 1 year ago - by Anonymous

Software set of command-line and R tools for performing Random-walk with performing Random-walk on multiplex networks in any species.

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• 1 year ago - submitted by Matthew Lane

Compact, dual-channel fluorometer designed to provide highly sensitive fluorescent detection when quantifying nucleic acids. Fluorometer is optimized with preprogrammed settings for Promega QuantiFluor Dye Systems (QuantiFluor dsDNA, RNA and ssDNA Systems) to quantitate nucleic acids and offers flexibility to create customized methods and quantitation settings for other fluorescent dyes.

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• 1 year ago - by Anonymous

Website to identify the effects of certain gene mutations on splice behaviour.

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• 1 year ago - by Anonymous

Biophysical Core Facility supports structural biology studies focused on characterization of biophysical properties of biomolecules and their interactions with binding partners or novel drug candidates. Offers range of biophysical techniques for initial screening of hit/lead compound binding as well as rigorous characterization of the thermodynamic and hydrodynamic properties of various biological macromolecules (most commonly proteins and nucleic acids), macromolecular association reactions, and ligand-macromolecule interactions. Biophysical techniques include differential scanning fluorimetry, microscale thermophoresis, isothermal titration calorimetry, differential scanning calorimetry, circular dichroism spectroscopy, fluorescence spectroscopy, absorbance spectroscopy and analytical ultracentrifugation.

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• 1 year ago - by Anonymous

Self-contained X-ray system for delivering precise radiation dosage to specimens in biological or small animal research laboratory. The shielded cabinet includes Adjustable Specimen Shelf, Sample Viewing Window and Beam Hardening Filter Holder.TouchRAD Control Panel is multi-user, password protected touch screen interface with transportable database that can track individual system usage.Passwords, programmed exposure settings, and database management are controlled by super-user.X-ray tube is used specifically for radiation therapy having highly homogenous beam. Options available include: Dose Measurement & Control, Motorized Specimen Shelf,Turntable, Fixed Beam Collimators, Adjustable Collimator, and Specimen Holding Fixtures.

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• 1 year ago - submitted by Ratan Sadhukhan

Biotechnology company in Cambridge, Massachusetts, developing the next generation of genomic profiling tools that enable researchers to gain new insight into the biological systems that underlie human health and disease with spatial context. The company's MERSCOPE platform enables massively multiplexed, genome-scale nucleic acid imaging with high accuracy and unrivaled detection efficiency at subcellular resolution.

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• 1 year ago - by Anonymous

System automates sample imaging, imaging analysis, and cell segmentation, delivering high-resolution, high-throughput imaging without compromising sensitivity. Powered by MERFISH technology, MERSCOPE Ultra includes high-performance analysis computer, along with the necessary reagents and software to accurately quantify and localize RNA and protein in tissue samples. High-resolution in situ spatial genomics platform that offers tissue-wide view of up to 1000 custom genes at single-cell resolution.

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• 1 year ago - by Anonymous

Facility offers preparation and visualization ranging from standard 2D EM methods to high resolution 3D cryo-EM. Instruments, training and assisted use are available for Brandeis faculty, staff, and lab members, as well as members of the broader scientific community, including other academic institutions and for-profit organizations.

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• 1 year ago - submitted by Edyta Vieth

Facility provides access to and operational support for easy-to-operate equipment for sample preparation and analysis, including gel imagers, plate readers, and qPCRs. They provide training on instrument operation and grant access for independent use after completed training.

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• 1 year ago - submitted by Edyta Vieth

Core provides equipment, personnel, and protocols for routine and advanced cellular and molecular assays for research.

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• 1 year ago - submitted by Bryan Hackfort

Software R package used for calling Copy Number Variations from single-cell ATAC data.

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• 1 year ago - by Anonymous

Medical image analysis software to measure, segment and analyze multi-slice scanner data.

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• 1 year ago - by Anonymous

Born of the desire to systematize analyses from The Cancer Genome Atlas pilot and scale their execution to the dozens of remaining diseases to be studied, GDAC Firehose now sits atop terabytes of analysis-ready TCGA data and reliably executes thousands of pipelines per month.

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• 1 year ago - by Anonymous

Software tool to distinguish host and graft reads from next generation sequencing assays of xenograft samples. Performs classification of xenograft-derived sequence read data.

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• 1 year ago - by Anonymous

Software Python toolkit for mutational signature analysis. Used to estimate mutational signatures from somatic mutations in genome.

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• 1 year ago - by Anonymous