Curator Dashboard

Core provides range of genomics technologies to support basic, translational, and clinical research.Services support basic research. Clinical assays offered are similar to those offered to support basic research, except that these assays are validated under CLIA, enabling them to be used in clinical decision making process in research protocols and for routine patient care.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package that provides utility functions to manage and analyse MS2/MS3 fragmentation data from ion trap mass spectrometry. It was designed for high throughput metabolomics data with many biological samples and a large numer of ion trees collected. Tests have been done with data from low-resolution mass spectrometry but could be readily extended to precursor ion based fragmentation data from high resoultion mass spectrometry.

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• SciCrunch
• 12 years ago - by Anonymous

Software for identifying associations between host genetic variation and microbiome composition. HOMINID is a computational approach based on Lasso linear regression, that given host genetic variation and microbiome taxonomic composition data, identifies host SNPs that are correlated with microbial taxa abundances.

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• SciCrunch
• 9 years ago - submitted by Ran Blekhman

Facility works with investigators to obtain and analyze high-quality nutrition and body composition data from study participants. Staff and facilities are located in the Schubert Research Clinic at Cincinnati Childrens Hospital. Core provides diet assessment services.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Database of embryonic expression patterns using a high throughput RNA in situ hybridization of the protein-coding genes identified in the Drosophila melanogaster genome with images and controlled vocabulary annotations. At the end of production pipeline gene expression patterns are documented by taking a large number of digital images of individual embryos. The quality and identity of the captured image data are verified by independently derived microarray time-course analysis of gene expression using Affymetrix GeneChip technology. Gene expression patterns are annotated with controlled vocabulary for developmental anatomy of Drosophila embryogenesis. Image, microarray and annotation data are stored in a modified version of Gene Ontology database and the entire dataset is available on the web in browsable and searchable form or MySQL dump can be downloaded. So far, they have examined expression of 7507 genes and documented them with 111184 digital photographs.

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• SciCrunch
• 17 years ago - by Anonymous

A Web-based Analysis Tool for Indirect Calorimetry Experiments which measure physiological energy balance. It is a web application for indirect calorimetry analysis which generates customizable time, bar and regression plots for calorimetry data using two-, three-, and four-group templates.

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• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Web application to download database for motif enrichment, motif annotations,cluster-buster implementation, precomputed regions for creating gene-based databases and to download lists of transcription factors for human, mouse and fly, chip-seq tracks annotations.

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• RRID
• 3 years ago - by Anonymous

An R package for array comparative genomic hybridization (aCGH) dye bias normalization.

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• SciCrunch
• 12 years ago - by Anonymous

Web application to perform automated model construction and genome annotation for large-scale metabolic networks. Platform for accessing, analyzing and manipulating genome-scale metabolic networks (GSM) as well as biochemical pathways.

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• SciCrunch
• 9 years ago - by Anonymous

Platform collates tools, databases, information, and other resources that can be useful to researchers and data producing facilities working in the area of data driven life science. Hub for data driven life science research in Sweden.

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• RRID
• 3 years ago - by Anonymous

Allen Mouse Brain Atlas includes full color, high resolution anatomic reference atlas accompanied by systematic, hierarchically organized taxonomy of mouse brain structures. Enables interactive online exploration of atlas and to provide deeper level of 3D annotation for informatics analysis and viewing in Brain Explorer 3D viewer.

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• SciCrunch
• 17 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 5th, 2023. Center for pathobiology research development.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Core for proteomics technology development and service. Provides mass spectrometry analytical services to academic, industrial, and government laboratories.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Freely accessible phenotype-centered database with integrated analysis and visualization tools. It combines diverse data sets from multiple species and experiment types, and allows data sharing across collaborative groups or to public users. It was conceived of as a tool for the integration of biological functions based on the molecular processes that subserved them. From these data, an empirically derived ontology may one day be inferred. Users have found the system valuable for a wide range of applications in the arena of functional genomic data integration.

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• SciCrunch
• 16 years ago - by Anonymous

Test study

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• cvbtest
• 9 years ago - submitted by Udi Rubin

Software library providing Python interfaces to proteomic data. Provides set of modules to facilitate the most common tasks in proteomics data analysis.

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• RRID
• 3 years ago - by Anonymous

R package providing functions to assess and to compare the performance of risk prediction (survival) models.

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• SciCrunch
• 13 years ago - by Anonymous

Database that contains behavioral and social science measures organized by theoretical constructs. GEM is designed to enable researchers to use common measures with the goal of exchanging harmonized data.

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• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Microbial culturing facility focused on growing microorganisms with diverse physiologies from photosynthesis to methanogenesis.

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• RRID
• 2 years ago - submitted by Sebastian Kopf

Software that provides rapid incremental file transfer.

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• SciCrunch
• 13 years ago - by Anonymous