Curator Dashboard

Software Python package to perform genomic selection. Predicts phenotypes from comprehensive multi-omics functional annotations with interpretable deep learning framework. Novel interpretable DL-based genomic prediction model that integrates comprehensive species- and tissue-level transcriptional regulatory functional annotations to predict phenotypes.

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• RRID
• 1 year ago - submitted by ma wenlong

Open source Python-based image-analysis software that rapidly detects and segments berries and extracts morphometric data on fruit quality traits such as berry color, size, shape, and uniformity. Used for quantifying visual phenotypes of cranberries and other berries.

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• dkNET
• 1 year ago - by Anonymous

Software library and associated tools for reading and writing bigwig and bigbed files. High-performance BigWig and BigBed library in Rust.

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• RRID
• 1 year ago - by Anonymous

Software Python tool to perform motif enrichment analysis in sets of regions with different tools and identify high confidence TF cistromes.

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• RRID
• 1 year ago - by Anonymous

Backend application to process high-resolution histology images to DeepZoomImage format, made of smaller tiles, for use in the QUINT Workflow.

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• SciCrunch
• 1 year ago - by Anonymous

Software pipeline for universal mapping of ATAC-seq.

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• RRID
• 1 year ago - by Anonymous

Software Python package to optionally compute statistical test and add statistical annotations on plots generated with seaborn. Used to add statistical significance or custom annotations on seaborn plots.

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• RRID
• 1 year ago - by Anonymous

Software Python/Rust package for single-cell epigenomics analysis.

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• RRID
• 1 year ago - by Anonymous

Software Python library to train, interpret, and apply deep learning models to DNA sequences. Comprehensive framework for DNA sequence modeling and design.

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• RRID
• 1 year ago - by Anonymous

Software application for biological sequence analysis for the modern age.

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• RRID
• 1 year ago - by Anonymous

Software package to access the Borzoi models, which are convolutional neural networks trained to predict RNA-seq coverage at 32bp resolution given 524kb input sequences.

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• RRID
• 1 year ago - by Anonymous

Software Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.

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• RRID
• 1 year ago - by Anonymous

Software Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for designing cell type-specific sequences.

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• RRID
• 1 year ago - by Anonymous

Core is part of the UCI Sue and Bill Gross stem cell research center. Provides various fee based services to researchers at UCI towards flow cytometry and cell sorting.

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• RRID
• 1 year ago - submitted by Arul Subramanian

Core provides services ranging from DNA/RNA QC analysis, library construction and sequencing on various platforms. Offers several sequencing platforms from Illumina’s MiSeq and NovaSeq to PacBio’s Sequel II System.

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• RRID
• 1 year ago - submitted by Arul Subramanian

Shared resource facility to provide researchers access to resources, including state of the art instrumentation and technical support, to conduct biomedical research. Provides access to light microscopes (confocal, mesoscale lightsheet, and Super Resolution), as well as software for 3D and 4D analysis.

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• RRID
• 1 year ago - submitted by Arul Subramanian

Program of University of Wisconsin Population Health Institute, highlights policies and practices that can help everyone be as healthy as possible. Aims to grow shared understanding of health, equity and power of communities to improve health for all.

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• RRID
• 1 year ago - by Anonymous

Software R package implementing multivariate lasso and ridge regression using stacked generalization. Used for predicting correlated outcomes.

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• RRID
• 1 year ago - by Anonymous

Core provides microscopy services to departments at MD Anderson in high resolution and multispectral fluorescence microscopy for users from divisions including Basic Research, Cancer Medicine, Diagnostic Imaging, Surgery, Internal Medicine Pediatrics and Radiation Oncology, among others. Offers microscopy resources and expertise in fluorescence imaging to spatially and dynamically assess cells, tissues and their requisite contents across scales.

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• RRID
• 1 year ago - by Anonymous

Software application as updated version of original ssGSEA R-implementation. Depending on the input dataset and chosen database (gene sets or PTM signatures), the software performs either ssGSEA or PTM-SEA, respectively.

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• RRID
• 1 year ago - by Anonymous