Curator Dashboard

Core facility provides microscopy services including confocals, epifluorescence, 2-photon, lightsheet, superresolution, slide scanning and image analysis.

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• SciCrunch
• 3 hours ago - submitted by Edyta Vieth

Core offers integrated biobanking, histology, digital pathology and other advanced tissue analysis services to support basic, translational and clinical research.

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• RRID
• 3 hours ago - by Anonymous

Software Python library to manage metabolic networks. Python library for hAndling metaData of METabolism.

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• RRID
• 1 day ago - submitted by David James Sherman

Software tool for informed prediction and analysis of bacterial metabolic pathways and genome-scale network. Used to predict metabolic pathways and automatically reconstruct microbial metabolic models.

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• RRID
• 1 day ago - submitted by David James Sherman

Software Phyton tool for genome-scale metabolic model reconstruction. Used for reconstruction of species and community level metabolic models.

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• RRID
• 1 day ago - submitted by David James Sherman

Ultrasonic shearing instrument used to fragment chromatin, shear DNA and RNA, and lyse cells.

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• RRID
• 2 days ago - by Anonymous

Core provides services, shared research equipment and technical support for flow cytometric analysis and high-speed cell sorting. Used to study cells using multi-laser instruments, separate specific cell populations, and design experiments.

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• RRID
• 2 days ago - by Anonymous

Core offers nanofabrication services and tools for lithography, deposition, etch, and characterization. Used for researching, building, and measuring materials on a microscopic scale. Provides cleanroom space and advanced tools for academic and industry projects.

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• RRID
• 2 days ago - by Anonymous

Core is fully equipped histological laboratory providing embedding station, automatic coverslipper, immunohistological platforms for standardized and automated immunohistochemistry, slide scanners, laser microdissection and light-sheet fluorescence microscope.

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• RRID
• 2 days ago - by Anonymous

Software R package for constructing cell-type-specific co-expression networks. Provides functions for data preprocessing, generation of cell-type-specific features, identification of cell-type-specific modules, and GO enrichment analysis for specific cell types. Used to dissect the explore gene co-expression networks within distinct cell types.

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• RRID
• 2 days ago - by Anonymous

Software Python package for analysis of single-cell spatial transcriptomics data. Used to read, visualize, and analyze the spatially resolved gene expression within one dataset but also across different datasets. Provides general structure for organizing multiple datasets and its corresponding metadata.

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• RRID
• 2 days ago - by Anonymous

Software R package for spatially resolved transcriptomics analysis and visualization.

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• RRID
• 2 days ago - by Anonymous

Software R package to calculate spatial distance between spots from spatial transcriptome data. Calculates nearest neighbor distances between specified cell types and provides comprehensive visualization tools to explore spatial patterns. Used for analyzing spatial relationships between cell types in spatial transcriptomics data, studying cell-cell interactions, immune microenvironment characterization, and spatial organization of tissues.

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• RRID
• 2 days ago - by Anonymous

Software R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.

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• RRID
• 2 days ago - by Anonymous

Software tool for signature analysis and visualization for single-cell RNA-seq data by selecting for gene signatures which describe coordinated variation between cells.

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• RRID
• 2 days ago - by Anonymous

Software R package for learning cell types and cell type-specific differential expression in spatial transcriptomics data. Used for cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics.

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• RRID
• 2 days ago - by Anonymous

Software R package to convert Seurat objects to 10x Genomics Loupe files. Works with Seurat objects to create a .cloupe file. The .cloupe file can then be imported into Loupe Browser v7.0 for data visualization and further exploration.

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• RRID
• 2 days ago - by Anonymous

Open benchmark for scientific critique honesty and epistemic calibration on recent life-science and biomedical literature. It tests whether models keep claims inside what the evidence allows (overclaim / planted-flaw / falsifier selection) and whether stated confidence is calibrated, with judge-free MCQ axes plus open-ended critique scoring.

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• SciCrunch
• 2 days ago - by Anonymous

Browser-based tool to open almost any sequence file — FASTA, FASTQ, GenBank, EMBL, Swiss-Prot, AB1/ABIF, SCF, Clustal, Stockholm, PHYLIP, NEXUS, MSF, PIR and more — see every sequence inside, pick the ones you want, and save them as FASTA. The format is detected from the file content, not from the extension, so unlabelled or misnamed files still open. Runs entirely in the browser — files are never uploaded.

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• RRID
• 4 days ago - submitted by Fishka Bio

Browser-based viewer for GenBank and GenPept files. Renders an interactive linear and circular feature map, the annotated source text, and the nucleotide/protein sequence side by side. Translates CDS features using the record's own genetic code and translation qualifiers, flags where the stored /translation disagrees with a plain translation, and adds optional computed layers: ORF prediction and restriction-site mapping. Handles multi-record files. Runs entirely in the browser — files are never uploaded.

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• RRID
• 4 days ago - submitted by Fishka Bio