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Endoscopic liquid biopsies of gastric fluid in a large human patient cohort reveal DNA content as a candidate tumor biomarker in gastric cancer.

Francine C Cadoná | Thais F Bartelli | Adriane G Pelosof | Claudia Z Sztokfisz | Adriana P Bueno | Luana Batista do Carmo Dos Santos | Gabriela P Branco | Gabriel Oliveira Dos Santos | Warley A Nunes | Fernanda A Pintor | Laís Lie Senda de Abrantes | Alexandre Defelicibus | Luiz Gonzaga Vaz Coelho | Marcis Leja | Haejin In | Sharon Li | Howard Hochster | Felipe J F Coimbra | Rodrigo Drummond | Israel Tojal Da Silva | Ravi J Chokshi | Renata Pasqualini | Wadih Arap | Diana N Nunes | Emmanuel Dias-Neto
eLife | 2025

Gastric cancer remains a diagnostic and therapeutic challenge worldwide. Improved prognostic biomarkers could aid treatment planning across surgical, neoadjuvant, and adjuvant settings. We evaluated a novel liquid-biopsy approach integrated with esophagogastroduodenoscopy (EGD) by analyzing gastric fluid DNA (gfDNA) from a large cohort (n=1056) to assess its diagnostic utility and prognostic value in gastric cancer. In this exploratory study, gfDNA concentration was measured in patients with normal gastric mucosa, peptic diseases, preneoplastic conditions, or cancer. Variables included sex, gastric fluid pH, proton-pump inhibitor use, tumor subtype, stage, and outcomes. gfDNA levels were significantly higher in gastric cancer than in all comparison groups (mean 26.86 ng/µL; 95% CI 20.05-33.79; p=3.61 × 10e-12) and as compared to non-malignant controls (mean 10.77 ng/µL; 95% CI 9.23-12.33; p=9.55 × 10e-13) and preneoplastic states (mean 10.10 ng/µL; 95% CI 7.59-12.60; p=1.10 × 10e-5). Advanced tumors (T3) exhibited higher gfDNA than earlier stages (T2 or below; mean 25.66 vs 15.12 ng/µL; p=5.97 × 10e-4). In a subset of gastric cancer patients, gfDNA >1.28 ng/µL associated with longer progression-free survival (p=0.009) and correlated with increased tumor-infiltrating immune cells (p=0.001); this association remained after adjusting for stage (p=0.014). Elevated gfDNA supports gastric cancer presence in the general human population and may inform disease management when combined with tissue biopsies. Importantly, gfDNA shows prognostic potential in established gastric cancer, where higher gfDNA content may paradoxically relate to better outcomes, potentially linked to immune-cell infiltration. These findings warrant further validation and integration with complementary diagnostic modalities to enhance accuracy and clinical utility.

Pubmed ID: 41400466

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Associated grants

  • Agency: Fundação de Amparo à Pesquisa do Estado de São Paulo,
    Id: 2014/26897-0
  • Agency: Ministério da Saúde,
    Id: PRONON/DECIT
  • Agency: Levy-Longenbaugh,
    Id: Donor-Advised Fund
  • Agency: Fundação de Amparo à Pesquisa do Estado de São Paulo,
    Id: 2018/14267-2
  • Agency: Fundação de Amparo à Pesquisa do Estado de São Paulo,
    Id: 2018/02972-3
  • Agency: Ministério da Saúde,
    Id: SIPAR 2500.035-167/2015-23

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R package: maxstat (software toolkit)

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Software R package to perform test of independence of response and one or more covariables using maximally selected rank statistics.

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RRID:SCR_002798

Statistical analysis software that combines scientific graphing, comprehensive curve fitting (nonlinear regression), understandable statistics, and data organization. Designed for biological research applications in pharmacology, physiology, and other biological fields for data analysis, hypothesis testing, and modeling.

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