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Whole exome sequencing and proteomics-based investigation of the pathogenesis of coronary artery disease with diffuse long lesion.

Ce Chao | Yongxiang Qian | Hao Lv | Kun Mei | Min Wang | Yang Liu | Bin Wang | Dongmei Di
Journal of cardiothoracic surgery | 2024

The long-term prognosis of patients with coronary artery disease (CAD) with diffuse long lesion underwent coronary artery bypass graft (CABG) or percutaneous coronary intervention (PCI) remains worse. Here, we aimed to identify distinctive genes involved and offer novel insights into the pathogenesis of diffuse long lesion.

Pubmed ID: 38715006

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Associated grants

  • Agency: Science and Technology Project of Changzhou Health Commission,
    Id: WZ202106
  • Agency: Young Talent Development Plan of Changzhou Health Commission,
    Id: CZQM2020034
  • Agency: Young Talent Development Plan of Changzhou Health Commission,
    Id: CZQM2020004
  • Agency: Young talents Science and technology project of Changzhou Health Commission,
    Id: QN201913
  • Agency: Basic Research Project of Changzhou science and Technology Bureau,
    Id: CJ20200104
  • Agency: Social Development Projects of Changzhou science and Technology Bureau,
    Id: CE20205039

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This is a list of tools and resources that we have found mentioned in this publication.


GeneMANIA (tool)

RRID:SCR_005709

Data analysis service to predict the function of your favorite genes and gene sets. Indexing 1,421 association networks containing 266,984,699 interactions mapped to 155,238 genes from 7 organisms. GeneMANIA interaction networks are available for download in plain text format. GeneMANIA finds other genes that are related to a set of input genes, using a very large set of functional association data. Association data include protein and genetic interactions, pathways, co-expression, co-localization and protein domain similarity. You can use GeneMANIA to find new members of a pathway or complex, find additional genes you may have missed in your screen or find new genes with a specific function, such as protein kinases. Your question is defined by the set of genes you input. If members of your gene list make up a protein complex, GeneMANIA will return more potential members of the protein complex. If you enter a gene list, GeneMANIA will return connections between your genes, within the selected datasets. GeneMANIA suggests annotations for genes based on Gene Ontology term enrichment of highly interacting genes with the gene of interest. GeneMANIA is also a gene recommendation system. GeneMANIA is also accessible via a Cytoscape plugin, designed for power users. Platform: Online tool, Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible

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Genome Aggregation Database (tool)

RRID:SCR_014964

Database that aggregates exome and genome sequencing data from large-scale sequencing projects. The gnomAD data set contains individuals sequenced using multiple exome capture methods and sequencing chemistries. Raw data from the projects have been reprocessed through the same pipeline, and jointly variant-called to increase consistency across projects.

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