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A pipeline for sample tagging of whole genome bisulfite sequencing data using genotypes of whole genome sequencing.

Zhe Xu | Si Cheng | Xin Qiu | Xiaoqi Wang | Qiuwen Hu | Yanfeng Shi | Yang Liu | Jinxi Lin | Jichao Tian | Yongfei Peng | Yong Jiang | Yadong Yang | Jianwei Ye | Yilong Wang | Xia Meng | Zixiao Li | Hao Li | Yongjun Wang
BMC genomics | 2023

In large-scale high-throughput sequencing projects and biobank construction, sample tagging is essential to prevent sample mix-ups. Despite the availability of fingerprint panels for DNA data, little research has been conducted on sample tagging of whole genome bisulfite sequencing (WGBS) data. This study aims to construct a pipeline and identify applicable fingerprint panels to address this problem.

Pubmed ID: 37353738

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This is a list of tools and resources that we have found mentioned in this publication.


Chinese Genome Sequence Archive (tool)

RRID:SCR_025826

Public archive of raw sequence data in National Genomics Data Center as part of the China National Center for Bioinformation. GSA accepts worldwide data submissions, performs data curation and quality control for all submitted data. Provides data storage and sharing services.

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