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The pattern of alternative splicing and DNA methylation alteration and their interaction in linseed (Linum usitatissimum L.) response to repeated drought stresses.

Ling Wang | Lei Wang | Meilian Tan | Linhai Wang | Wei Zhao | Jun You | Lijun Wang | Xingchu Yan | Wei Wang
Biological research | 2023

Drought stress has significantly hampered agricultural productivity worldwide and can also result in modifications to DNA methylation levels. However, the dynamics of DNA methylation and its association with the changes in gene transcription and alternative splicing (AS) under drought stress are unknown in linseed, which is frequently cultivated in arid and semiarid regions.

Pubmed ID: 36922868

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This is a list of tools and resources that we have found mentioned in this publication.


methylKit (tool)

RRID:SCR_005177

An R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing.

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REViGO (tool)

RRID:SCR_005825

Web server that summarizes lists of Gene Ontology terms by removing redundant terms and visualizing the remaining ones in scatterplots, interactive graphs, treemaps, or tag clouds. Platform: Online tool

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HISAT2 (tool)

RRID:SCR_015530

Graph-based alignment of next generation sequencing reads to a population of genomes.

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