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Deep learning with language models improves named entity recognition for PharmaCoNER.

Cong Sun | Zhihao Yang | Lei Wang | Yin Zhang | Hongfei Lin | Jian Wang
BMC bioinformatics | 2021

The recognition of pharmacological substances, compounds and proteins is essential for biomedical relation extraction, knowledge graph construction, drug discovery, as well as medical question answering. Although considerable efforts have been made to recognize biomedical entities in English texts, to date, only few limited attempts were made to recognize them from biomedical texts in other languages. PharmaCoNER is a named entity recognition challenge to recognize pharmacological entities from Spanish texts. Because there are currently abundant resources in the field of natural language processing, how to leverage these resources to the PharmaCoNER challenge is a meaningful study.

Pubmed ID: 34920700

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This is a list of tools and resources that we have found mentioned in this publication.


PyTorch (tool)

RRID:SCR_018536

Open source machine learning library based on Torch library, used for applications such as computer vision and natural language processing. Software Python package that provides tensor computation with strong GPU acceleration and deep neural networks built on tape-based autograd system.

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