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Rapid discovery of self-assembling peptides with one-bead one-compound peptide library.

Pei-Pei Yang | Yi-Jing Li | Yan Cao | Lu Zhang | Jia-Qi Wang | Ziwei Lai | Kuo Zhang | Diedra Shorty | Wenwu Xiao | Hui Cao | Lei Wang | Hao Wang | Ruiwu Liu | Kit S Lam
Nature communications | 2021

Self-assembling peptides have shown tremendous potential in the fields of material sciences, nanoscience, and medicine. Because of the vast combinatorial space of even short peptides, identification of self-assembling sequences remains a challenge. Herein, we develop an experimental method to rapidly screen a huge array of peptide sequences for self-assembling property, using the one-bead one-compound (OBOC) combinatorial library method. In this approach, peptides on beads are N-terminally capped with nitro-1,2,3-benzoxadiazole, a hydrophobicity-sensitive fluorescence molecule. Beads displaying self-assembling peptides would fluoresce under aqueous environment. Using this approach, we identify eight pentapeptides, all of which are able to self-assemble into nanoparticles or nanofibers. Some of them are able to interact with and are taken up efficiently by HeLa cells. Intracellular distribution varied among these non-toxic peptidic nanoparticles. This simple screening strategy has enabled rapid identification of self-assembling peptides suitable for the development of nanostructures for various biomedical and material applications.

Pubmed ID: 34301935

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Associated grants

  • Agency: NCI NIH HHS, United States
    Id: P30 CA093373
  • Agency: NIGMS NIH HHS, United States
    Id: T32 GM113770

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ProtParam Tool (tool)

RRID:SCR_018087

Software tool to calculate various physicochemical parameters for given protein stored in Swiss-Prot or TrEMBL or for user entered protein sequence. Protein can either be pecified as Swiss-Prot/TrEMBL accession number or ID, or in form of raw sequence. Computed parameters include molecular weight, theoretical pI, amino acid composition, atomic composition, extinction coefficient, estimated half-life, instability index, aliphatic index and grand average of hydropathicity.

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HeLa (tool)

RRID:CVCL_0030

Cell line HeLa is a Cancer cell line with a species of origin Homo sapiens

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