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A genome engineering resource to uncover principles of cellular organization and tissue architecture by lipid signaling.

Deepti Trivedi | Vinitha Cm | Karishma Bisht | Vishnu Janardan | Awadhesh Pandit | Bishal Basak | Shwetha H | Navyashree Ramesh | Padinjat Raghu
eLife | 2020

Phosphoinositides (PI) are key regulators of cellular organization in eukaryotes and genes that tune PI signaling are implicated in human disease mechanisms. Biochemical analyses and studies in cultured cells have identified a large number of proteins that can mediate PI signaling. However, the role of such proteins in regulating cellular processes in vivo and development in metazoans remains to be understood. Here, we describe a set of CRISPR-based genome engineering tools that allow the manipulation of each of these proteins with spatial and temporal control during metazoan development. We demonstrate the use of these reagents to deplete a set of 103 proteins individually in the Drosophila eye and identify several new molecules that control eye development. Our work demonstrates the power of this resource in uncovering the molecular basis of tissue homeostasis during normal development and in human disease biology.

Pubmed ID: 33320085

Associated grants

  • Agency: Department of Biotechnology, Ministry of Science and Technology, India, International
    Id: BT/PRJ3748/GET/l 19/27/2015
  • Agency: Wellcome Trust DBt India Alliance, International
    Id: IA/S/14/2/501540
  • Agency: Department of Atomic Energy, Government of India, International
    Id: 12R-D-TFR-5.04-0900
  • Agency: Wellcome Trust, United Kingdom
  • Agency: Department of Atomic Energy, Government of India, International
    Id: 12R-D-TFR-5.04-08002

Publication data is provided by the National Library of Medicine ® and PubMed ®. Data is retrieved from PubMed ® on a weekly schedule. For terms and conditions see the National Library of Medicine Terms and Conditions.

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Addgene (tool)

RRID:SCR_002037

Non-profit plasmid repository dedicated to helping scientists around the world share high-quality plasmids. Facilitates archiving and distributing DNA-based research reagents and associated data to scientists worldwide. Repository contains over 65,000 plasmids, including special collections on CRISPR, fluorescent proteins, and ready-to-use viral preparations. There is no cost for scientists to deposit plasmids, which saves time and money associated with shipping plasmids themselves. All plasmids are fully sequenced for validation and sequencing data is openly available. We handle the appropriate Material Transfer Agreements (MTA) with institutions, facilitating open exchange and offering intellectual property and liability protection for depositing scientists. Furthermore, we curate free educational resources for the scientific community including a blog, eBooks, video protocols, and detailed molecular biology resources.

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pClamp (tool)

RRID:SCR_011323

Software suite for electrophysiology data acquisition and analysis by Molecular Devices. Used for the control and recording of voltage clamp, current clamp, and patch clamp experiments. The software suite consists of Clampex 11 Software for data acquisition, AxoScope 11 Software for background recording, Clampfit 11 Software for data analysis, and optional Clampfit Advanced Analysis Module for sophisticated and streamlined analysis.

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Agilent Technologies (tool)

RRID:SCR_013575

Company provides laboratories worldwide with analytical instruments and supplies, clinical and diagnostic testing services, consumables, applications and expertise in life sciences and applied chemical markets.

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RRID:CVCL_Z831

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w[1118]; PBac{y[+mDint2] GFP[E.3xP3]=vas-Cas9}VK00027 (organism)

RRID:BDSC_51324

Drosophila melanogaster with name w[1118]; PBac{y[+mDint2] GFP[E.3xP3]=vas-Cas9}VK00027 from BDSC.

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y[1] v[1] P{y[+t7.7]=nos-phiC31\int.NLS}X; P{y[+t7.7]=CaryP}attP40 (organism)

RRID:BDSC_25709

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y[1] sc[*] v[1] sev[21]; P{y[+t7.7] v[+t1.8]=nos-Cas9.R}attP40 (organism)

RRID:BDSC_78781

Drosophila melanogaster with name y[1] sc[*] v[1] sev[21]; P{y[+t7.7] v[+t1.8]=nos-Cas9.R}attP40 from BDSC.

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P{y[+t7.7]=nos-phiC31\int.NLS}X, y[1] sc[1] v[1] sev[21]; P{y[+t7.7]=CaryP}attP2 (organism)

RRID:BDSC_25710

Drosophila melanogaster with name P{y[+t7.7]=nos-phiC31\int.NLS}X, y[1] sc[1] v[1] sev[21]; P{y[+t7.7]=CaryP}attP2 from BDSC.

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y[1] sc[*] v[1] sev[21]; P{y[+t7.7] v[+t1.8]=nos-Cas9.R}attP2 (organism)

RRID:BDSC_78782

Drosophila melanogaster with name y[1] sc[*] v[1] sev[21]; P{y[+t7.7] v[+t1.8]=nos-Cas9.R}attP2 from BDSC.

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