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Variational representational similarity analysis.

Karl J Friston | Jörn Diedrichsen | Emma Holmes | Peter Zeidman
NeuroImage | 2019

This technical note describes a variational or Bayesian implementation of representational similarity analysis (RSA) and pattern component modelling (PCM). It considers RSA and PCM as Bayesian model comparison procedures that assess the evidence for stimulus or condition-specific patterns of responses distributed over voxels or channels. On this view, one can use standard variational inference procedures to quantify the contributions of particular patterns to the data, by evaluating second-order parameters or hyperparameters. Crucially, this allows one to use parametric empirical Bayes (PEB) to infer which patterns are consistent among subjects. At the between-subject level, one can then assess the evidence for different (combinations of) hypotheses about condition-specific effects using Bayesian model comparison. Alternatively, one can select a single hypothesis that best explains the pattern of responses using Bayesian model selection. This note rehearses the technical aspects of within and between-subject RSA using a worked example, as implemented in the Statistical Parametric Mapping (SPM) software. En route, we highlight the connection between univariate and multivariate analyses of neuroimaging data and the sorts of analyses that are possible using component modelling and representational similarity analysis.

Pubmed ID: 31255808

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Associated grants

  • Agency: Wellcome Trust, United Kingdom
    Id: 088130/Z/09/Z
  • Agency: Wellcome Trust, United Kingdom
    Id: 203147/Z/16/Z

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This is a list of tools and resources that we have found mentioned in this publication.


SPM (tool)

RRID:SCR_007037

Software package for analysis of brain imaging data sequences. Sequences can be a series of images from different cohorts, or time-series from same subject. Current release is designed for analysis of fMRI, PET, SPECT, EEG and MEG.

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