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Objective risk stratification of prostate cancer using machine learning and radiomics applied to multiparametric magnetic resonance images.

Bino Varghese | Frank Chen | Darryl Hwang | Suzanne L Palmer | Andre Luis De Castro Abreu | Osamu Ukimura | Monish Aron | Manju Aron | Inderbir Gill | Vinay Duddalwar | Gaurav Pandey
Scientific reports | 2019

Multiparametric magnetic resonance imaging (mpMRI) has become increasingly important for the clinical assessment of prostate cancer (PCa), but its interpretation is generally variable due to its relatively subjective nature. Radiomics and classification methods have shown potential for improving the accuracy and objectivity of mpMRI-based PCa assessment. However, these studies are limited to a small number of classification methods, evaluation using the AUC score only, and a non-rigorous assessment of all possible combinations of radiomics and classification methods. This paper presents a systematic and rigorous framework comprised of classification, cross-validation and statistical analyses that was developed to identify the best performing classifier for PCa risk stratification based on mpMRI-derived radiomic features derived from a sizeable cohort. This classifier performed well in an independent validation set, including performing better than PI-RADS v2 in some aspects, indicating the value of objectively interpreting mpMRI images using radiomics and classification methods for PCa risk assessment.

Pubmed ID: 30733585

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Associated grants

  • Agency: NIGMS NIH HHS, United States
    Id: R01 GM114434
  • Agency: NIEHS NIH HHS, United States
    Id: U24 ES026465

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MATLAB (tool)

RRID:SCR_001622

Multi paradigm numerical computing environment and fourth generation programming language developed by MathWorks. Allows matrix manipulations, plotting of functions and data, implementation of algorithms, creation of user interfaces, and interfacing with programs written in other languages, including C, C++, Java, Fortran and Python. Used to explore and visualize ideas and collaborate across disciplines including signal and image processing, communications, control systems, and computational finance.

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