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Identification of genes expressed in the migrating primitive myeloid lineage of Xenopus laevis.

Zachary N Agricola | Amrita K Jagpal | Andrew W Allbee | Allison R Prewitt | Emily T Shifley | Scott A Rankin | Aaron M Zorn | Alan P Kenny
Developmental dynamics : an official publication of the American Association of Anatomists | 2016

During primitive hematopoiesis in Xenopus, cebpa and spib expressing myeloid cells emerge from the anterior ventral blood island. Primitive myeloid cells migrate throughout the embryo and are critical for immunity, healing, and development. Although definitive hematopoiesis has been studied extensively, molecular mechanisms leading to the migration of primitive myelocytes remain poorly understood. We hypothesized these cells have specific extracellular matrix modifying and cell motility gene expression.

Pubmed ID: 26264370

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Associated grants

  • Agency: NICHD NIH HHS, United States
    Id: R01 HD073179
  • Agency: NICHD NIH HHS, United States
    Id: T32 HD007463
  • Agency: NIDDK NIH HHS, United States
    Id: R01 DK070858
  • Agency: NIDDK NIH HHS, United States
    Id: P30 DK078392
  • Agency: NICHD NIH HHS, United States
    Id: T32 HD07463
  • Agency: NICHD NIH HHS, United States
    Id: R01 HD73179
  • Agency: NHLBI NIH HHS, United States
    Id: K08 HL105661

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ToppGene Suite (tool)

RRID:SCR_005726

ToppGene Suite is a one-stop portal for gene list enrichment analysis and candidate gene prioritization based on functional annotations and protein interactions network. ToppGene Suite is a one-stop portal for (i) gene list functional enrichment, (ii) candidate gene prioritization using either functional annotations or network analysis and (iii) identification and prioritization of novel disease candidate genes in the interactome. Functional annotation-based disease candidate gene prioritization uses a fuzzy-based similarity measure to compute the similarity between any two genes based on semantic annotations. The similarity scores from individual features are combined into an overall score using statistical meta-analysis.

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