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Zoonotic simian foamy virus in Bangladesh reflects diverse patterns of transmission and co-infection.

Gregory A Engel | Christopher T Small | Khanh Soliven | Mostafa M Feeroz | Xiaoxing Wang | M Kamrul Hasan | Gunwha Oh | S M Rabiul Alam | Karen L Craig | Dana L Jackson | Frederick A Matsen Iv | Maxine L Linial | Lisa Jones-Engel
Emerging microbes & infections | 2013

Simian foamy viruses (SFVs) are ubiquitous in non-human primates (NHPs). As in all retroviruses, reverse transcription of SFV leads to recombination and mutation. Because more humans have been shown to be infected with SFV than with any other simian borne virus, SFV is a potentially powerful model for studying the virology and epidemiology of viruses at the human/NHP interface. In Asia, SFV is likely transmitted to humans through macaque bites and scratches that occur in the context of everyday life. We analyzed multiple proviral sequences from the SFV gag gene from both humans and macaques in order to characterize retroviral transmission at the human/NHP interface in Bangladesh. Here we report evidence that humans can be concurrently infected with multiple SFV strains, with some individuals infected by both an autochthonous SFV strain as well as a strain similar to SFV found in macaques from another geographic area. These data, combined with previous results, suggest that both human-facilitated movement of macaques leading to the introduction of non-resident strains of SFV and retroviral recombination in macaques contribute to SFV diversity among humans in Bangladesh.

Pubmed ID: 26038489

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Associated grants

  • Agency: NCRR NIH HHS, United States
    Id: P51 RR000166
  • Agency: NIAID NIH HHS, United States
    Id: R01 AI078229
  • Agency: NCI NIH HHS, United States
    Id: R01 CA018282
  • Agency: NIAID NIH HHS, United States
    Id: R03 AI064865

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GENEWIZ (tool)

RRID:SCR_003177

Commercial organization for research and development genomics services and technical support to researchers.

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SplitsTree (tool)

RRID:SCR_014734

Application that uses molecular sequence data to compute unrooted phylogenetic networks. Given an alignment of sequences, a distance matrix, or a set of trees, the program will compute a phylogenetic tree or network using methods such as split decomposition, neighbor-net, consensus network, super networks methods or methods for computing hybridization or simple recombination networks.

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FastTree (tool)

RRID:SCR_015501

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