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Multilocus sequence typing of a global collection of Pasteurella multocida isolates from cattle and other host species demonstrates niche association.

Emily J Hotchkiss | J Christopher Hodgson | F Alex Lainson | Ruth N Zadoks
BMC microbiology | 2011

Pasteurella multocida causes disease in many host species throughout the world. In bovids, it contributes to bovine respiratory disease (BRD) and causes haemorrhagic septicaemia (HS). Previous studies have suggested that BRD-associated P. multocida isolates are of limited diversity. A multilocus sequence typing (MLST) scheme for P. multocida was used to determine whether the low levels of diversity reported are due to the limited discriminatory power of the typing method used, restricted sample selection or true niche association. Bovine respiratory isolates of P. multocida (n = 133) from the UK, the USA and France, collected between 1984 and 2008 from both healthy and clinically affected animals, were typed using MLST. Isolates of P. multocida from cases of HS, isolates from other host species and data from the MLST database were used as comparison.

Pubmed ID: 21612618

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This is a list of tools and resources that we have found mentioned in this publication.


PubMLST (tool)

RRID:SCR_012955

Database for molecular typing and microbial genome diversity.

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START (tool)

RRID:SCR_009394

Software application that finds starting points for MCMC analysis performed on large, complex pedigrees and polymorphic markers. (entry from Genetic Analysis Software)

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SplitsTree (tool)

RRID:SCR_014734

Application that uses molecular sequence data to compute unrooted phylogenetic networks. Given an alignment of sequences, a distance matrix, or a set of trees, the program will compute a phylogenetic tree or network using methods such as split decomposition, neighbor-net, consensus network, super networks methods or methods for computing hybridization or simple recombination networks.

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