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TAM: a method for enrichment and depletion analysis of a microRNA category in a list of microRNAs.

Ming Lu | Bing Shi | Juan Wang | Qun Cao | Qinghua Cui
BMC bioinformatics | 2010

MicroRNAs (miRNAs) are a class of important gene regulators. The number of identified miRNAs has been increasing dramatically in recent years. An emerging major challenge is the interpretation of the genome-scale miRNA datasets, including those derived from microarray and deep-sequencing. It is interesting and important to know the common rules or patterns behind a list of miRNAs, (i.e. the deregulated miRNAs resulted from an experiment of miRNA microarray or deep-sequencing).

Pubmed ID: 20696049

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PubChem Substance (tool)

RRID:SCR_004742

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Kyoto Encyclopedia of Genes and Genomes Expression Database (tool)

RRID:SCR_001120

Database for mapping gene expression profiles to pathways and genomes. Repository of microarray gene expression profile data for Synechocystis PCC6803 (syn), Bacillus subtilis (bsu), Escherichia coli W3110 (ecj), Anabaena PCC7120 (ana), and other species contributed by the Japanese research community.

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miRBase (tool)

RRID:SCR_003152

Central online repository for microRNA nomenclature, sequence data, annotation and target prediction.Collection of published miRNA sequences and annotation.

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