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Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia.

Shaobin Hou | Kira S Makarova | Jimmy H W Saw | Pavel Senin | Benjamin V Ly | Zhemin Zhou | Yan Ren | Jianmei Wang | Michael Y Galperin | Marina V Omelchenko | Yuri I Wolf | Natalya Yutin | Eugene V Koonin | Matthew B Stott | Bruce W Mountain | Michelle A Crowe | Angela V Smirnova | Peter F Dunfield | Lu Feng | Lei Wang | Maqsudul Alam
Biology direct | 2008

The phylum Verrucomicrobia is a widespread but poorly characterized bacterial clade. Although cultivation-independent approaches detect representatives of this phylum in a wide range of environments, including soils, seawater, hot springs and human gastrointestinal tract, only few have been isolated in pure culture. We have recently reported cultivation and initial characterization of an extremely acidophilic methanotrophic member of the Verrucomicrobia, strain V4, isolated from the Hell's Gate geothermal area in New Zealand. Similar organisms were independently isolated from geothermal systems in Italy and Russia.

Pubmed ID: 18593465

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Associated grants

  • Agency: Intramural NIH HHS, United States
    Id: Z99 LM999999

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EMBOSS (tool)

RRID:SCR_008493

Software analysis package for molecular biology community. Automatically copes with data in variety of formats and allows transparent retrieval of sequence data from web. Libraries are provided with package. Provides toolkit for creating bioinformatics applications or workflows. Provides set of sequence analysis programs. Provided programs cover areas such as sequence alignment, rapid database searching with sequence patterns, protein motif identification, nucleotide sequence pattern analysis, codon usage analysis for small genomes, rapid identification of sequence patterns in large scale sequence sets, and presentation tools for publication.

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