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Complex phylogeographic history of central African forest elephants and its implications for taxonomy.

Mireille B Johnson | Stephen L Clifford | Benoît Goossens | Silvester Nyakaana | Bryan Curran | Lee Jt White | E Jean Wickings | Michael W Bruford
BMC evolutionary biology | 2007

Previous phylogenetic analyses of African elephants have included limited numbers of forest elephant samples. A large-scale assessment of mitochondrial DNA diversity in forest elephant populations here reveals a more complex evolutionary history in African elephants as a whole than two-taxon models assume.

Pubmed ID: 18093290

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Sequencher (tool)

RRID:SCR_001528

Software for Next-Generation DNA sequencing, Sanger DNA analysis, and RNA sequencing. It contains sequence analysis tools which include reference-guided alignments, de novo assembly, variant calling, and SNP analyses. It has integrated the Cufflinks suite for in-depth transcript analysis and differential gene expression of RNA-Seq data.

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ARLEQUIN (tool)

RRID:SCR_009051

An exploratory population genetics software environment able to handle large samples of molecular data (RFLPs, DNA sequences, microsatellites), while retaining the capacity of analyzing conventional genetic data (standard multi-locus data or mere allele frequency data). (entry from Genetic Analysis Software)

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