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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Stanford Genomics Service Center Core Facility Resource Report Resource Website 10+ mentions |
Stanford Genomics Service Center Core Facility (RRID:SCR_002050) | SFGF, | access service resource, core facility, service resource | Stanford Genomics formerly Stanford Functional Genomics Facility provides services for high throughput sequencing, single cell assays, gene expression and genotyping studies utilizing microarray and real time PCR, and related services. High throughput sequencing (Illumina HiSeq 4000, NextSeq 500, MiSeq and MiniSeq), microarray gene expression and genotyping services (Affymetrix, Agilent and Illumina). Provides 24/7 access to instruments, equipment and software utilized within genomics field. | ABRF, Stanford Genomics, genomics, high throughput sequencing, single cell assays, gene expression, genotyping, microarray, real time PCR, |
is listed by: ABRF CoreMarketplace has parent organization: Stanford University; Stanford; California |
Comprehensive Cancer Center ; NIAID |
Open | SCR_008627, ABRF_200, nif-0000-31997, nif-0000-12246 | https://coremarketplace.org/?FacilityID=200&citation=1 | http://www.microarray.org/sfgf/ | SCR_002050 | Stanford Medicine Stanford Functional Genomics Facility, Stanford University Functional Genomics Core Facility, Stanford Functional Genomics Facility, Stanford Genomics, Stanford Genomics Service Center, Stanford School of Medicine Stanford Functional Genomics Facility | 2026-09-12 12:55:36 | 11 | ||||
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Thermo Fisher: Nanodrop 1000 Spectrophotometer Resource Report Resource Website 50+ mentions |
Thermo Fisher: Nanodrop 1000 Spectrophotometer (RRID:SCR_016517) | instrument resource | Spectrophotometer for measurement and analysis of 1 ul samples with high accuracy and reproducibility. Full spectrum from 220nm to 750nm spectrophotometer utilizes patented sample retention technology that employs surface tension alone to hold sample in place. No need for cuvettes. Has capability to measure highly concentrated samples without dilution. | ABRF, spectrophotometer, nanodrop, concentration measurement, optical density, DNA, RNA, protein, nanodrop, instrument, equipment |
is listed by: USEDit works with: Thermo Scientific NanoDrop 1000 Software |
Commercially available | https://drive.google.com/file/d/1C1Dj_A1QxQibucCbFNues9EDZebDnx8K/view?usp=drivesdk | SCR_018035, Model_Number_Nanodrop_1000, SCR_020560 | https://www.marshallscientific.com/Nanodrop-ND-1000-Spectrophotometer-p/nd-1000.htm, https://www.selectscience.net/products/nanodrop-1000-spectrophotometer/?prodID=79482#tab-2, http://tools.thermofisher.com/content/sfs/manuals/nd-1000-v3.8-users-manual-8%205x11.pdf | SCR_016517 | NanoDrop 1000, Nanodrop ND-1000, Thermo Scientific NanoDrop 1000, NanoDrop 1000 Spectrophotometer | 2026-09-12 12:58:40 | 89 | ||||||
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Promega: TBS-380 Fluorimeter Resource Report Resource Website |
Promega: TBS-380 Fluorimeter (RRID:SCR_018615) | instrument resource | Dual channel fluorimeter for fluorescence measurements when calibrated with known concentration to measure compounds at low concentration with low assay volume. | Fluorometer, Instrument, Equipment, USEDit, ABRF, Promega | is listed by: USEDit | Model_Number_TBS_380 | https://www.promega.com/-/media/files/products-and-services/instruments/detection/tbs-technical-support-docs/tbs380-manual.pdf?la=en | SCR_018615 | 2026-09-12 12:59:03 | 0 | |||||||||
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Promega: GloMax 96 Microplate Luminometer Resource Report Resource Website 1+ mentions |
Promega: GloMax 96 Microplate Luminometer (RRID:SCR_018614) | instrument resource | Microplate luminometer that features two optional injectors and reads both glow- and flash-luminescent reactions in 96-well plates. The sensitivity and range enable a wide range of luminescent assays, including Promega bioluminescent reporter, cell-based and biochemical assays., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | Microplate Luminometer, Instrument, Equipment, Luminometer, USEDit, Promega, ABRF | THIS RESOURCE IS NO LONGER IN SERVICE | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_019964.pdf | SCR_019964, Model_Number_GloMax_96 | https://www.promega.com/-/media/files/resources/protocols/technical-manuals/0/glomax-96-microplate-luminometer-protocol.pdf | SCR_018614 | GloMax 96 Microplate Luminometer | 2026-09-12 12:59:03 | 4 | |||||||
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Qiagen: PyroMark Q96 System Resource Report Resource Website 10+ mentions |
Qiagen: PyroMark Q96 System (RRID:SCR_018617) | instrument resource | Sequencing and quantification platform for epigenetics, mutation gene expression analysis, and microbial identification and resistance typing. With its 96-well format, automatic base-calling function, and dedicated software solutions for methylation analysis and assay design. | Pyrosequencer, Instrument, Equipment, Qiagen, USEDit, ABRF | is listed by: USEDit | SCR_020413, Model_Number_Q96 | SCR_018617 | 2026-09-12 12:59:03 | 11 | ||||||||||
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Thermo Fisher: GeneAtlas System Resource Report Resource Website 1+ mentions |
Thermo Fisher: GeneAtlas System (RRID:SCR_018715) | instrument resource | System for processing Affymetrix microarrays. Microarray analysis system. Includes array strip and hybridization assembly, Fluidics station, Imaging station. | ABRF, Affymetrix, instrument, Thermo Fisher Scientific, Affymetrix Gene Atlas Fluidics Station, Affymetrix HuGene, Geneatlas system, imaging station, equipment |
is listed by: USEDit works with: Affymetrix Transcriptome Analysis Console Software works with: Affymetrix Transcriptome Analysis Console Software |
https://assets.thermofisher.com/TFS-Assets/LSG/brochures/geneatlas_system_brochure.pdf | SCR_018715 | GeneAtlas System, Affymetrix GeneAtlas System | 2026-09-12 12:59:05 | 1 | |||||||||
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Thermo Fisher: NanoDrop 8000 Spectrophotometer Resource Report Resource Website 1+ mentions |
Thermo Fisher: NanoDrop 8000 Spectrophotometer (RRID:SCR_018600) | instrument resource | Microvolume UV Vis spectrophotometer for nucleic acid and protein quantification that can measure multiple samples using 1 to 2 uL of samples. Can analyze spectrum of 220nm to 750nm and measure 96 samples in less than six minutes. Can measure multiple samples in one measurement cycle, up to eight samples at one time. Has single sample mode. Can analyze the full spectrum from 220 to 750nm and calculates sample purity ratios 260/280. | Spectrophotometer, Instrument, Equipment, Nanodrop, USEDit, ABRF |
is listed by: USEDit is related to: Thermo Fisher: NanoDrop Lite Spectrophotometer |
Commercially available | Model_Number_NanoDrop_8000, SCR_020315 | https://afns-labs.ualberta.ca/wp-content/uploads/sites/58/2018/05/Nanodrop-ND-8000-brochure.pdf.pdf | SCR_018600 | 2026-09-12 12:59:03 | 7 | ||||||||
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Nikon: AZ100 Confocal Microscope Resource Report Resource Website 1+ mentions |
Nikon: AZ100 Confocal Microscope (RRID:SCR_018603) | instrument resource | Nikon Instruments AZ100 C1si is macro confocal microscope system combining stereo and compound microscopes into single hybrid imaging system for dynamic imaging of single cells or whole specimens.System covers range of magnifications from 5x to 400x. Has triple nosepiece that can switch magnifications. AZ100 C1si boasts simultaneous 32 channel spectral image acquisition over spectral range of 320 nm in single scan. Simultaneous 32 channel acquisition at 10 nm, 5 nm or 2.5 nm bandwidths, all software controlled, is possible. | Confocal Microscope, Instrument, Equipment, Nikon, USEDit, ABRF | is listed by: USEDit | Commercially available | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018603.pdf | Model_Number_AZ100, SCR_020325 | https://www.mvi-inc.com/wp-content/uploads/AZ100-Manual.pdf | SCR_018603 | 2026-09-12 12:59:03 | 2 | |||||||
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Marshall Scientific: MJ Research PTC-100 PCR Thermocycler Resource Report Resource Website 10+ mentions |
Marshall Scientific: MJ Research PTC-100 PCR Thermocycler (RRID:SCR_018602) | instrument resource | Thermocycler that operates with 96 well and 60 well microplates. Has temperature configurations from 0 C to 105 C and pressure and height adjustment via thumbwheel. Comes with 14 pre-programmed protocols. | PCR Thermocycler, Instrument, Equipment, USEDit, MJ Research, ABRF | is listed by: USEDit | Commercially available | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018602.pdf | Model_Number_PTC100, SCR_020292 | https://www.artisantg.com/info/MJ_PTC_100_Manual.pdf | SCR_018602 | 2026-09-12 12:59:03 | 12 | |||||||
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Waters: 2695 HPLC System Resource Report Resource Website 1+ mentions |
Waters: 2695 HPLC System (RRID:SCR_018649) | instrument resource | High performance liquid chromatographic system with quaternary, low pressure mixing pump and inline vacuum degassing. It has wavelengths of 190 to 800 nm and flow rates from 50 uL per min to 5 mL per min with 2.1 mm ID columns and larger. Autosampler has maximum capacity of 120 vials (12x32, 2 mL) with programmable temperature control from 4 to 40C. Heated column compartment provides temperatures from 5 degrees above ambient to 65C. | HPLC System, Instrument, Equipment, USEDit, Waters, ABRF | is listed by: USEDit | Commercially available | Model_Number_2695, SCR_020877 | https://www.waters.com/webassets/cms/library/docs/720004547en.pdf | SCR_018649 | Waters Alliance 2695 Separations Module | 2026-09-12 12:59:04 | 1 | |||||||
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Stratagene: 1800 UV Crosslinker Resource Report Resource Website |
Stratagene: 1800 UV Crosslinker (RRID:SCR_018631) | instrument resource | UV crosslinker designed to crosslink DNA or RNA to nylon, nitrocellulose, or nylon reinforced nitrocellulose membranes in 25 to 50 seconds. It is equipped with internal photodetector to compensate for aging ultraviolet bulbs. | Crosslinker, Instrument, Equipment, USEDit, ABRF, Stratagene | is listed by: USEDit | Commercially available | Model_Number_1800, SCR_020532 | https://ipmb.sinica.edu.tw/microarray/index.files/Stratalinker%20UV%20Crosslinker.pdf | SCR_018631 | 2026-09-12 12:59:03 | 0 | ||||||||
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SCIEX: 4000 QTRAP Mass Spectrometer Resource Report Resource Website |
SCIEX: 4000 QTRAP Mass Spectrometer (RRID:SCR_018630) | instrument resource | Hybrid triple quadrupole linear ion trap mass spectrometer for drug discovery and development, metabolite identification, contaminant testing, proteomic applications, post translationally modified proteins discovery, protein identification, and biomarker validation. | Mass Spectrometer, Instrument, Equipment, USEDit, Sciex, ABRF | is listed by: USEDit | Commercially available | SCR_020508, Model_Number_Sciex_4000_QTRAP | https://collateral.sciex.com/manuals/4000-qtrap-hardware-guide/4000-qtrap-hardware-guide.pdf | SCR_018630 | 2026-09-12 12:59:03 | 0 | ||||||||
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TA Instruments: Electroforce 3200 Mechanical Testing Apparatus Resource Report Resource Website 1+ mentions |
TA Instruments: Electroforce 3200 Mechanical Testing Apparatus (RRID:SCR_018637) | instrument resource | Mechanical testing apparatus with 225 N or 450 N maximum force and range of static to 300 Hz frequency response. Tests include torsion testing, creep under dynamic loading, special environment hot cold chambers, biomedical research, and engineered materials test applications.. | Mechanical Testing Apparatus, Instrument, Equipment, USEDit, ABRF | is listed by: USEDit | SCR_019752, Model_Number_3200 | https://www.tainstruments.com/wp-content/uploads/ElectroForce_Test_Instruments.pdf | SCR_018637 | TA Instruments Electroforce 3200 Series Mechanical Testing Apparatus | 2026-09-12 12:59:04 | 2 | ||||||||
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Thermo Fisher: Cytomat 6001 Automated Wide Range Incubator Resource Report Resource Website |
Thermo Fisher: Cytomat 6001 Automated Wide Range Incubator (RRID:SCR_018646) | instrument resource | Automated wide range incubator used to minimize plate movement, receive samples, store plates, and track plates.Temperature range is from 10 to 50 degrees Celsius with humidity level of up to 95 rH. | Automated Wide Range Incubator, Instrument, Equipment, USEDit, Thermo Scientific, ABRF | is listed by: USEDit | SCR_020541, Model_Number_Cytomat 6001 | https://www.artisantg.com/info/Kendro_Cytomat_6000_6001_Manual.pdf | SCR_018646 | 2026-09-12 12:59:04 | 0 | |||||||||
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Beckman Coulter: L-90K Ultracentrifuge Resource Report Resource Website |
Beckman Coulter: L-90K Ultracentrifuge (RRID:SCR_019651) | instrument resource | Ultracentrifuge is used for centrifugation of subcellular particles, virus isolations, and high purity plasmid DNA. | Beckman Coulter, Centrifuge, Instrument, Equipment, Beckman Coulter, USEDit, ABRF, | Commercially available | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_019651.pdf | Model_Number_L90K | SCR_019651 | 2026-09-12 12:59:19 | 0 | |||||||||
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Thermo Fisher: Applied Biosystems: 3730xl Capillary Genetic Sequencer Resource Report Resource Website 1+ mentions |
Thermo Fisher: Applied Biosystems: 3730xl Capillary Genetic Sequencer (RRID:SCR_018059) | instrument resource | 96-capillary DNA analyzer that performs DNA fragment analysis applications such as microsatellites, AFLP, SNP analysis, mutation detection and traditional DNA sequencing. Has multiple automation features. Performs sequencing and fragment analysis applications including resequencing, microsatellite analysis, AFLP, LOH, SSCP, SNP screening and SNP validation. | ABRF, capillary sequencer, 96-capillary DNA analyzer, high throughput genetic analysis, DNA fragment analysis, microsatellites, AFLP, SNP analysis, mutation detection, DNA sequencing, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018059.pdf | Model_Number_3730xl | SCR_018059 | Applied Biosystems 3730xl Capillary Sequencer | 2026-09-12 12:58:57 | 3 | ||||||||
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Agilent: Femto Pulse System Resource Report Resource Website 1+ mentions |
Agilent: Femto Pulse System (RRID:SCR_018058) | instrument resource | Femto Pulse System separates large molecular weight DNA fragments and detects nucleic acids into femtogram range.Fragment analyzer that provides pulsed field power supply which allows large molecular weight DNA fragments to be separated and nucleic acids detected into femtogram range. Ability to separate high molecular weight DNA up to 165 kb and detect nucleic acids down to 50 fg per uL input concentration makes system ideal for long-read NGS QC, gDNA, small RNA, or cfDNA analysis from low concentration samples. | ABRF, Agilent, Femto Pulse System, Instrument Equipment, USEDit, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018058.pdf | Model_Number_Femto Pulse, SCR_019498 | https://www.agilent.com/cs/library/usermanuals/public/quick-guide-fp-1002-gdna-165-kb-kit-SD-AT000141.pdf | SCR_018058 | AATI FemtoPulse, Advanced Analytical Technologies, Inc. FEMTO Pulse Fragment Analyzer, AATI FEMTO Pulse Fragment Analyzer | 2026-09-12 12:58:57 | 3 | |||||||
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Thermo Fisher: Applied Biosystems: 3730 Genetic Analyzer Resource Report Resource Website 1+ mentions |
Thermo Fisher: Applied Biosystems: 3730 Genetic Analyzer (RRID:SCR_018052) | instrument resource | Medium to high throughput genetic analyzer that performs DNA fragment analysis applications such as microsatellites, AFLP, SNP analysis, mutation detection and traditional DNA sequencing. Upgradeable to 96 capillaries. | ABRF, genetic analyzer, 96 capillary electrophoresis, DNA fragment analysis, microsatellites, AFLP, SNP analysis, mutation detection, DNA sequencing, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018052.pdf | Model_Number_3730 | https://assets.thermofisher.com/TFS-Assets/LSG/manuals/4478016A.pdf | SCR_018052 | 3730 DNA Analyzer | 2026-09-12 12:58:57 | 3 | |||||||
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Eppendorf: 5418 R Centrifuge Resource Report Resource Website |
Eppendorf: 5418 R Centrifuge (RRID:SCR_018050) | instrument resource | Refridgerated centrifuge with 18 place capacity rotor that accomdates low to medium capacity in 1.5 or 2.0 mL tubes and Microtainer. Speed allows for standard molecular biology applications. Compact size and quiet operation. | ABRF, refrigerated centrifuge, Eppendorf, benchtop centrifuge, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018050.pdf | Model_Number_5418_R | https://www.eppendorf.com/product-media/doc/en/173997/Eppendorf_Centrifugation_Operating-manual_Centrifuge-5418-R.pdf | SCR_018050 | Eppendorf 5418 Centrifuge (2) | 2026-09-12 12:58:57 | 0 | |||||||
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Bio-Rad: CFX384 Real-Time Detection System Resource Report Resource Website 10+ mentions |
Bio-Rad: CFX384 Real-Time Detection System (RRID:SCR_018057) | instrument resource | Real Time PCR instrument in 384-well format that performs high-throughput data acquisition. System utilizes temperature control and sensitive, 4-color detection optics to deliver qPCR results for singleplex or multiplex reactions. Quickly set up runs and monitor amplification traces in real time on integrated LCD touch screen, or use CFX Maestro Software to design experiment and analyze results from connected computer. | ABRF, Real-Time Instrument, RT PCR, equipment, Bio Rad | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018057.pdf | Model_Number_CFX384 | https://www.bio-rad.com/webroot/web/pdf/lsr/literature/Bulletin_5639C.pdf | SCR_018057 | Bio-Rad CFX384 Real-Time System | 2026-09-12 12:58:57 | 34 |
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