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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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SRAdb Resource Report Resource Website 10+ mentions |
SRAdb (RRID:SCR_006524) | SRAdb | software resource | Software package to make access to the compilation of metadata from NCBI SRA and tools associated with submission, study, sample, experiment and run much more feasible. This is accomplished by parsing all the NCBI SRA metadata into a SQLite database that can be stored and queried locally. Fulltext search in the package make querying metadata very flexible and powerful. fastq and sra files can be downloaded for doing alignment locally. Beside ftp protocol, the SRAdb has funcitons supporting fastp protocol (ascp from Aspera Connect) for faster downloading large data files over long distance. The SQLite database is updated regularly as new data is added to SRA and can be downloaded at will for the most up-to-date metadata. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is related to: NCBI Sequence Read Archive (SRA) has parent organization: Bioconductor |
PMID:23323543 | Artistic License, v2 | biotools:sradb, OMICS_01032 | https://bio.tools/sradb | SCR_006524 | SRAdb - A compilation of metadata from NCBI SRA and tools | 2026-08-08 11:58:39 | 18 | |||||
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seq crumbs Resource Report Resource Website 1+ mentions |
seq crumbs (RRID:SCR_006486) | seq_crumbs | software resource | A collection of small sequence processing utilities that are modeled after the Unix command line text processing utilities so every utility tries to perform a specific task and most of them take a sequence file as input and create a new processed sequence file as output. This design encourages the assembly of the seq_crumbs utilities with Unix pipes to create complex pipelines. | is listed by: OMICtools | Mainly under the, GNU General Public License | OMICS_01075 | SCR_006486 | 2026-08-08 11:58:45 | 9 | |||||||||
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Plant Organelles Database Resource Report Resource Website 1+ mentions |
Plant Organelles Database (RRID:SCR_006520) | PODB, PODB2 | video resource, data or information resource, image collection, narrative resource, database, experimental protocol, service resource, storage service resource, data repository | Database of images, movies, and protocols to promote a comprehensive understanding of plant organelle dynamics, including organelle function, biogenesis, differentiation, movement, and interactions with other organelles. It consists of 5 individual parts, ''Perceptive Organelles Database'', ''The Organelles Movie Database'', ''The Organellome Database'', ''The Functional Analysis Database'', and ''External Links to other databases and Web pages''. All the data and protocols in ''The Organelle Movie Database'', ''The Organellome Database'' and ''The Functional Analysis Database'' are populated by direct submission of experimentally determined data from plant researchers. Your active contributions by submission of data and protocols to our database would also be appreciated. * Perceptive Organelles Database: This database contains images and movies of organelles in various tissues during different developmental stages in response to environmental stimuli. * Organelles Movie Database: This database contains time-lapse images, Z slices and projection images of organelles in various tissues during different developmental stages, visualized using fluorescent and non-fluorescent probes. * Organellome Database: This database contains images for cellular structures that are composed of organelle images in various tissues during different developmental stages, visualized with fluorescent and non-fluorescent probes. * Functional Analysis Database: This database is a collection of protocols for plant organelle research. * External Links: Access to biological databases. | organelle, developmental stage, environmental stimuli, development, environment, stimulus, biochemical assay, nucleic acid, protein, gene expression, genome mapping, histology, tissue isolation, organelle isolation, plant growth, maintenance, visualization, observation, plant organelle, movement, division, subcellular positioning, behavior, external stimuli, green fluorescent protein, biogenesis, differentiation, interaction |
is related to: Plant Organelles World has parent organization: National Institute for Basic Biology; Okazaki; Japan |
Japanese Ministry of Education Culture Sports Science and Technology MEXT 16085101; Japan Society for the Promotion of Science 228052 |
PMID:21115470 PMID:19755394 PMID:17932059 |
Free for scientific and educational use provided the contributor and the Organellome Database and the Organelles Movie Database are properly credited. If you wish to use commercially, Please contact the contributors of the corresponding images and movies for permission. | nlx_151998, r3d100011300 | https://doi.org/10.17616/R3933R | SCR_006520 | Plant Organelles Database 2 | 2026-08-08 11:58:39 | 7 | ||||
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MGI GO Browser Resource Report Resource Website 1+ mentions |
MGI GO Browser (RRID:SCR_006489) | MGI GO Browser | data or information resource, production service resource, data analysis service, database, analysis service resource, service resource | With the MGI GO Browser, you can search for a GO term and view all mouse genes annotated to the term or any subterms. You can also browse the ontologies to view relationships between terms, term definitions, as well as the number of mouse genes annotated to a given term and its subterms. The MGI GO browser directly accesses the GO data in the MGI database, which is updated nightly. Platform: Online tool | gene, ontology, browser, molecular function, biological process, cellular component, ontology or annotation browser, ontology or annotation search engine, ontology or annotation visualization |
is listed by: Gene Ontology Tools is related to: Gene Ontology has parent organization: Mouse Genome Informatics (MGI) |
Free for academic use | nlx_149104 | SCR_006489 | 2026-08-08 11:58:38 | 8 | ||||||||
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Pathpedia.com - Online pathology resource Resource Report Resource Website |
Pathpedia.com - Online pathology resource (RRID:SCR_006482) | wiki, data or information resource, narrative resource, training resource, community building portal, database, service resource, continuing medical education, portal, book, meeting resource, job resource | Pathpedia.com is web-based wiki on human anatomical, clinical, and experimental pathology created for pathologists. This collaborative portal includes news, education, jobs, meetings, forums and links. The Education tab includes access to journals, books, CME / SAM/ CMIL, WikiBooks, eAtlas, etc. The eAtlas module allows you post unusual and difficult pathology cases to be reviewed by other pathologists across the globe. This module may help in identifying previously unreported entities and unusual / variant examples of known entities. Categories include Histopathology, Gross pathology, Normal histology, Image quiz and Case sharing. Immunopedia - A clinically useful web-based database on the immunohistochemical and flow cytometric evaluation of neoplasms. 1. Large database 2. Regular updates 3. Quality citations 4. Exquisite modules *Data included for both neoplastic & non-neoplastic tissues/cells *Clones indicated wherever applicable along with their markers *References cited for each piece of data on markers or diseases *Option provided to merge data of discrete disease categories Online case sharing *Share unusual cases with pathology community *Help identify previously unreported entities *Get expert reviews and comments from your peers | nlx_22643 | SCR_006482 | Pathpedia, Pathpedia.com | 2026-08-08 11:58:38 | 0 | |||||||||||
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Xavier University of Louisiana; Louisiana; USA Resource Report Resource Website |
Xavier University of Louisiana; Louisiana; USA (RRID:SCR_006483) | XULA | university | A private, coeducational, liberal arts college with the distinction of being the only historically black Roman Catholic institution of higher education located in the Gert Town section of New Orleans, Louisiana, USA. |
is parent organization of: XULA Materials Research - Shared Instrumentation Facilities is parent organization of: LCRC Proteomics Core Facility is parent organization of: LCRC Biospecimen Core is parent organization of: LCRC Adult Stem Cell Core is parent organization of: LCRC Cell Analysis and Immunology Core Facility is parent organization of: LCRC Genomics Core Facility is parent organization of: LCRC Microarray Core is parent organization of: LCRC Morphology and Imaging Core is parent organization of: XULA Major Instrumentation Core is parent organization of: XULA Animal Care Facility is parent organization of: XULA Center for Nanomedicine and Drug Delivery is parent organization of: XULA RCMI Cell and Molecular Biology Core is parent organization of: XULA RCMI Molecular Structure and Modeling Core |
grid.268355.f, nlx_156107, Wikidata:Q390087, ISNI:0000 0000 9679 3586 | https://ror.org/0085d9t86 | SCR_006483 | Xavier University of Louisiana | 2026-08-08 11:58:45 | 0 | ||||||||
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Gene Ontology For Functional Analysis (GOFFA) Resource Report Resource Website 1+ mentions |
Gene Ontology For Functional Analysis (GOFFA) (RRID:SCR_006484) | GOFFA | software resource, software application, data analysis software, data processing software | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 23,2023. Software tool developed for ArrayTrack that takes a list of genes and identifies terms in Gene Ontology associated with those genes. GOFFA provides tools to view/access the following: GO term hierarchy, full listing of GO terms annotated with the genes associated with a given term, Fisher's exact test p-value providing the probability of identifying that many genes for a given term by chance alone, and relative enrichment factor (E-value) giving the enrichment of a GO term for genes in the submitted list relative to the frequency of genes assigned to that term from the full set of GOFFA annotated genes for a particular species. | gene ontology, proteomic, visualization, fisher's exact test, browser, search engine, term enrichment, text mining, ontology browser, annotation browser, ontology visualization, annotation visualization, database, data warehouse, software, identify term |
is used by: ArrayTrack is listed by: Gene Ontology Tools is related to: Gene Ontology has parent organization: National Center for Toxicological Research |
PMID:17118145 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_149101 | http://edkb.fda.gov/webstart/arraytrack/ | SCR_006484 | Gene Ontology For Functional Analysis | 2026-08-08 11:58:59 | 9 | |||||
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California Digital Library Resource Report Resource Website 1+ mentions |
California Digital Library (RRID:SCR_006481) | CDL | institution | One of the world''s largest digital research libraries that changed the ways that faculty, students, and researchers discover and access information using innovative technology to connect content and communities in ways that enhance teaching, learning, and research. In partnership with the UC libraries, the CDL has continually broken new ground by developing systems linking their users to the vast print and online collections within UC and beyond. Building on the foundations of the Melvyl Catalog, they developed one of the largest online library catalogs in the country. They saved the University millions of dollars by facilitating the co-investment and sharing of materials and services used by libraries across the UC system. They work in partnership with campuses to bring the treasures of their libraries, museums, and cultural heritage organizations to the world. And they continue to explore how services such as digital curation, scholarly publishing, archiving and preservation support research throughout the information lifecycle. | library, digital, collection, catalog |
uses: DataCite is listed by: DataCite has parent organization: University of California; California; USA is parent organization of: UC3 Merritt is parent organization of: DMPTool is parent organization of: eScholarship is parent organization of: EZID is parent organization of: DataUp |
, grid.463323.3, nlx_156041, Wikidata: Q5020447, ISNI: 0000 0001 1957 5136 | https://ror.org/03yrm5c26, https://api.datacite.org/dois?prefix=10.24343 | SCR_006481 | 2026-08-08 11:58:59 | 2 | ||||||||
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UNITE Resource Report Resource Website 1000+ mentions |
UNITE (RRID:SCR_006518) | UNITE | data or information resource, production service resource, data analysis service, database, analysis service resource, service resource, storage service resource, data repository | A fungal rDNA internal transcribed spacer (ITS) sequence database (although additional genes and genetic markers are also welcome) to facilitate identification of environmental samples of fungal DNA. Additional important features include user annotation of INSD sequences to add metadata on, e.g., locality, habitat, soil, climate, and interacting taxa. The user can furthermore annotate INSD sequences with additional species identifications that will appear in the results of any analyses done. UNITE focuses on high-quality ITS sequences generated from fruiting bodies collected and identified by experts and deposited in public herbaria. In addition, it also holds all fungal ITS sequences in the International Nucleotide Sequence Databases (INSD: NCBI, EMBL, DDBJ). Both sets of sequences may be used in any analyses carried out. UNITE is accompanied by a project management system called PlutoF, where users can store field data, document the sequencing lab procedures, manage sequences, and make analyses. PlutoF intends to make it possible for taxonomists, ecologists, and biogeographers to use a common platform for data storage, handling, and analyses, with the intent of facilitating an integration of these disciplines. A user can have an unlimited number of projects but still make analyses across any project data available to him. | sequence, barcoding sequence, internal transcribed spacer sequence, rdna, gene, genetic marker, internal transcribed spacer, dna, FASEB list |
has parent organization: University of Tartu; Tartu; Estonia has parent organization: University of Oslo; Oslo; Norway has parent organization: University of Gothenburg; Gothenburg; Sweden has parent organization: University of Lisbon; Lisbon; Portugal |
PMID:20409185 PMID:15869663 |
Creative Commons Attribution-ShareAlike License, v3 Unported, The community can contribute to this resource | nlx_61947, r3d100011316 | https://doi.org/10.17616/R37635 | http://unite.zbi.ee | SCR_006518 | unite: A molecular database for the identification of fungi | 2026-08-08 11:58:45 | 2291 | ||||
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MethylSeekR Resource Report Resource Website 50+ mentions |
MethylSeekR (RRID:SCR_006513) | MethylSeekR | software resource | A software package for the discovery of regulatory regions from Bis-seq data. |
is listed by: OMICtools has parent organization: Bioconductor |
GNU General Public License, v2 or greater | OMICS_00607 | SCR_006513 | MethylSeekR - Segmentation of Bis-seq data | 2026-08-08 11:58:45 | 54 | ||||||||
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Autoimmunity Centers of Excellence Resource Report Resource Website |
Autoimmunity Centers of Excellence (RRID:SCR_006510) | ACE | data or information resource, resource, topical portal, disease-related portal, portal, research forum portal | Nine centers that conduct clinical trials and basic research on new immune-based therapies for autoimmune diseases. This program enhances interactions between scientists and clinicians in order to accelerate the translation of research findings into medical applications. By promoting better coordination and communication, and enabling limited resources to be pooled, ACEs is one of NIAID''''s primary vehicles for both expanding our knowledge and improving our ability to effectively prevent and treat autoimmune diseases. This coordinated approach incorporates key recommendations of the NIH Autoimmune Diseases Research Plan and will ensure progress in identifying new and highly effective therapies for autoimmune diseases. ACEs is advancing the search for effective treatments through: * Diverse Autoimmunity Expertise Medical researchers at ACEs include rheumatologists, neurologists, gastroenterologists, and endocrinologists who are among the elite in their respective fields. * Strong Mechanistic Foundation ACEs augment each clinical trial with extensive basic studies designed to enhance understanding of the mechanisms responsible for tolerance initiation, maintenance, or loss, including the role of cytokines, regulatory T cells, and accessory cells, to name a few. * Streamlined Patient Recruitment The cooperative nature of ACEs helps scientists recruit patients from distinct geographical areas. The rigorous clinical and basic science approach of ACEs helps maintain a high level of treatment and analysis, enabling informative comparisons between patient groups. | immune system, infection, clinical trial, clinical, basic research |
is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources |
Type 1 diabetes, Diabetes, Autoimmune disease, Systematic lupus erythematosus, Rheumatoid arthritis, Sjogren's syndrome, Multiple sclerosis, Chronic inflammatory bowel disease, Pemphigus vulgaris, Scleroderma | NIAID ; NIDDK ; NIH Office of Research on Womens Health |
nlx_152751 | SCR_006510 | 2026-08-08 11:58:59 | 0 | |||||||
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NCBI Resource Report Resource Website 10000+ mentions |
NCBI (RRID:SCR_006472) | NCBI | nonprofit organization | A portal to biomedical and genomic information. NCBI creates public databases, conducts research in computational biology, develops software tools for analyzing genome data, and disseminates biomedical information for the better understanding of molecular processes affecting human health and disease. | biomedical, genomic, molecular biology, health, disease, database, computational biology, bio.tools |
is used by: NIF Data Federation is listed by: NIDDK Information Network (dkNET) is listed by: bio.tools is listed by: Debian is related to: AmiGO is related to: NCBI Viral Genomes is related to: Clone DB is related to: PubReader is related to: OMIA - Online Mendelian Inheritance in Animals is related to: European Nucleotide Archive (ENA) is related to: Plant Co-expression Annotation Resource is related to: METAGENOTE is related to: Phyutility is related to: CaspBase is related to: Prokaryotic Genomes Automatic Annotation Pipeline has parent organization: National Library of Medicine is parent organization of: MedGen is parent organization of: dbSTS is parent organization of: PubMed Health is parent organization of: BLASTP is parent organization of: GQuery is parent organization of: BLASTN is parent organization of: GTEx eQTL Browser is parent organization of: BLASTX is parent organization of: Homology Maps Page is parent organization of: PEDHUNTER is parent organization of: Conserved Domain Database is parent organization of: NCBI Genome Survey Sequences Database is parent organization of: High Throughput Genomic Sequences Division is parent organization of: AceView is parent organization of: dbMHC is parent organization of: dbSNP is parent organization of: Entrez Gene is parent organization of: NCBI Genome is parent organization of: NCBI database of Genotypes and Phenotypes (dbGap) is parent organization of: GenBank is parent organization of: International HapMap Project is parent organization of: IgBLAST is parent organization of: Lowes Syndrome Mutation Database is parent organization of: HomoloGene is parent organization of: Influenza Virus Resource is parent organization of: Distant Regulatory Elements is parent organization of: e-PCR is parent organization of: MapViewer is parent organization of: Primer-BLAST is parent organization of: dbVar is parent organization of: NCBI Taxonomy is parent organization of: NCBI Protein Database is parent organization of: Gene Reference into Function is parent organization of: Protein Clusters is parent organization of: RefSeq is parent organization of: TPA is parent organization of: GENSAT at NCBI - Gene Expression Nervous System Atlas is parent organization of: COBALT: Constraint-based Multiple Alignment Tool is parent organization of: PubMed Central is parent organization of: UniLib is parent organization of: NCBI Structure is parent organization of: PubChem is parent organization of: Anopheles gambiae (African malaria mosquito) genome view is parent organization of: UniGene is parent organization of: NLM Catalog is parent organization of: Entrez GEO Profiles is parent organization of: Nucleotide database is parent organization of: NCBI BioSystems Database is parent organization of: CBLAST is parent organization of: NCBI BioProject is parent organization of: NCBI Probe is parent organization of: PubMed is parent organization of: NCBI BioSample is parent organization of: NCBI Nucleotide is parent organization of: NCBI Structure: Cn3D is parent organization of: NCBI BLAST is parent organization of: IBIS: Inferred Biomolecular Interactions Server is parent organization of: NCBI Sequence Read Archive (SRA) is parent organization of: Gene Expression Omnibus (GEO) is parent organization of: NCBI Popset is parent organization of: PIE the search is parent organization of: Genetic Testing Registry is parent organization of: NCBI Resource List is parent organization of: NCBI dbRBC is parent organization of: NCBI YouTube Channel is parent organization of: NCBI Epigenomics is parent organization of: ClinVar is parent organization of: Genome Reference Consortium is parent organization of: GeneReviews is parent organization of: Molecular Imaging and Contrast Agent Database is parent organization of: Consensus CDS is parent organization of: UniSTS is parent organization of: HIV-1 Human Protein Interaction Database is parent organization of: Assay Guidance Manual is parent organization of: Bookshelf is parent organization of: COG is parent organization of: Gene Expression Omnibus is parent organization of: Molecular Modelling DataBase is parent organization of: Organelle Genome Resources is parent organization of: SKY/M-FISH/CGH is parent organization of: dbEST is parent organization of: JournalReview.org is parent organization of: NCBI GenBank via FTP is parent organization of: PubChem Compound is parent organization of: Molecular Modeling DataBase is parent organization of: Vector Alignment Search Tool is parent organization of: PubChem BioAssay is parent organization of: NCBI Genome Workbench is parent organization of: TBLASTN is parent organization of: TBLASTX is parent organization of: Mega BLAST is parent organization of: Genetic Codes is parent organization of: HIV-1, Human Protein Interaction Database is parent organization of: PubReader is parent organization of: PubChem Substance is parent organization of: OMIA - Online Mendelian Inheritance in Animals is parent organization of: OMIM is parent organization of: 1000 Genomes: A Deep Catalog of Human Genetic Variation is parent organization of: GeneTests is parent organization of: NCBI Genome Survey Sequences Database is parent organization of: MagicBlast is parent organization of: RefSeq is parent organization of: Sequin is parent organization of: Batch Entrez is parent organization of: Entrez is parent organization of: tbl2asn is parent organization of: Whole Genome Shotgun (WGS) Project is parent organization of: Digital Differential Display (DDD) is parent organization of: BLASTClust is parent organization of: PASC is parent organization of: Open Reading Frame Finder is parent organization of: Genotyping works with: Human Mouse Disease Connection works with: A plasmid Editor works with: Database of genes related to Repeat Expansion Diseases |
Public, The community can contribute to this resource | nif-0000-00139, biotools:ncbi_resources | https://bio.tools/ncbi_resources | http://www.ncbi.nih.gov/ | SCR_006472 | National Center for Biotechnology Information, NCBI - National Center for Biotechnology Information | 2026-08-08 11:58:58 | 29053 | |||||
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EZID Resource Report Resource Website 1+ mentions |
EZID (RRID:SCR_006473) | EZID | production service resource, service resource | A production service that gives researchers the ability to create and manage long-term identifiers so that they can to track usage, get credit for their work, share their data, and have the data reused for additional research. As a result, EZID identifiers also make it possible to increase citations, to build on previous work, to conduct new research, and avoid duplicating previous efforts. EZID identifiers provide a simple but powerful way to track research materials, including datasets, throughout their life cycle. In this way, researchers can share their data, get more citations, and track their results. | data citation, data management, open citation, digital object identifier |
is listed by: FORCE11 has parent organization: California Digital Library |
Subscription | nlx_156045 | http://www.force11.org/node/4793 | SCR_006473 | easy-eye-dee | 2026-08-08 11:58:38 | 1 | ||||||
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Xiamen University; Xiamen; China Resource Report Resource Website 1+ mentions |
Xiamen University; Xiamen; China (RRID:SCR_006509) | university | Xiamen University, colloquially known as Xia Da in Mandarin Chinese or Ha Tai in Xiamen dialect, is public research university in Xiamen, Fujian, China with strengths in economics and management, fine arts, law, chemistry, journalism, communication, and mathematics. | is parent organization of: CytoSVM statistics | nlx_64389 | http://www.xmu.edu.cn/english/ | SCR_006509 | XMU | 2026-08-08 11:58:45 | 1 | |||||||||
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ResearchGate Resource Report Resource Website 100+ mentions |
ResearchGate (RRID:SCR_006505) | ResearchGate | database, data or information resource, portal, community building portal | A professional, social network and publication database geared to researchers where the latest field specific publications can be read, publications with other specialists can be discussed, and collaboration with colleagues is facilitated. They provide researchers with access to around 40 million abstracts and tens of thousands of Full texts, uploaded by the authors themselves. Researchers can search through 7 of the largest databases simultaneously, such as PubMed, IEEE & CiteSeer. | social network, biology, literature, publication, bibliographic, abstract, collaborate, statistics, citation, FASEB list |
is listed by: FORCE11 is listed by: DataCite is listed by: re3data.org is related to: PubMed is parent organization of: ResearchGate: Research Jobs is parent organization of: ResearchGate: Research Conferences |
Free, Account required, The community can contribute to this resource | nlx_143849, DOI:10.1314, DOI:10.17616/R36H16, r3d100012227 | https://doi.org/10.17616/R36011, https://doi.org/10.17616/r36H16, https://doi.org/10.1314/, https://dx.doi.org/10.1314/, https://doi.org/10.17616/R36H16 | SCR_006505 | Research Gate, Research gate | 2026-08-08 11:58:38 | 432 | ||||||
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Electron Microscopy Data Bank at PDBe (MSD-EBI) Resource Report Resource Website 100+ mentions |
Electron Microscopy Data Bank at PDBe (MSD-EBI) (RRID:SCR_006506) | EMDB at PDBe | data or information resource, production service resource, data analysis service, database, analysis service resource, service resource, storage service resource, data repository | Repository for electron microscopy density maps of macromolecular complexes and subcellular structures at Protein Data Bank in Europe. Covers techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. | electron microscopy, density map, macromolecule, complex, subcellular structure, single-particle analysis, electron tomography, electron crystallography, macromolecular complex, structure, protein, protein binding, electron, electron configuration, tomography, microscopy, gold standard |
is used by: DARC - Database for Aligned Ribosomal Complexes is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org is related to: EMDataResource.org is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: PDBe - Protein Data Bank in Europe |
NIH | Public | r3d100010562, nlx_149453 | https://doi.org/10.17616/R3HP57 | SCR_006506 | MSD-EBI, Electron Microscopy Data Bank at Protein Data Bank in Europe, Electron Microscopy DataBank, Electron Microscopy Data Bank at PDBe (MSD-EBI), Electron Microscopy Data Bank at PDBe | 2026-08-08 11:58:45 | 153 | |||||
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Phytozome Resource Report Resource Website 1000+ mentions |
Phytozome (RRID:SCR_006507) | Phytozome | data or information resource, production service resource, data analysis service, database, analysis service resource, service resource | A comparative platform for green plant genomics. Families of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology / paralogy relationships as well as clade specific genes and gene expansions. As of release v9.1, Phytozome provides access to forty-one sequenced and annotated green plant genomes which have been clustered into gene families at 20 evolutionarily significant nodes. Where possible, each gene has been annotated with PFAM, KOG, KEGG, and PANTHER assignments, and publicly available annotations from RefSeq, UniProt, TAIR, JGI are hyper-linked and searchable., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | genome, genomics, plant, green plant, cluster sequence, alignment, gene, node, cluster, blast, blat, biomart, peptide homolog, gene ancestry, sequence, annotation, gene structure, gene family, genome organization, comparative genomics, physiology, comparative, bio.tools, FASEB list |
is listed by: re3data.org is listed by: Debian is listed by: bio.tools is related to: Plant Co-expression Annotation Resource has parent organization: DOE Joint Genome Institute has parent organization: Lawrence Berkeley National Laboratory |
Gordon and Betty Moore Foundation ; DOE DE-AC02-05CH11231 |
PMID:22110026 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:phytozome, nlx_151490, r3d100010850 | https://bio.tools/phytozome, https://doi.org/10.17616/R38021 | SCR_006507 | 2026-08-08 11:58:59 | 3189 | |||||
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National Geothermal Data System Resource Report Resource Website 1+ mentions |
National Geothermal Data System (RRID:SCR_006545) | NGDS | data or information resource, database, service resource, storage service resource, data repository | Database of information resources on geothermal energy from a national network of data providers. Data are contributed by academic researchers, private sector participants, and state and federal agencies, primarily the Department of Energy. Access, view, and download data with this free and easy online search tool. | geothermal | is listed by: CINERGI | DOE award DE-EE0001120 | Free | nlx_155574, r3d100011016 | https://doi.org/10.17616/R37902 | SCR_006545 | 2026-08-08 11:58:39 | 1 | ||||||
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Office of Extramural Research NIH Resource Report Resource Website 100+ mentions |
Office of Extramural Research NIH (RRID:SCR_006547) | OER | funding resource, data or information resource, portal, organization portal | OER serves as a vital interface between the NIH and the biomedical research community by guiding investigators through the process of attaining grants funding and helping them understand and navigate through federal policies and procedures. OER supports extramural research by providing policy and guidance to the 24 NIH Institutes and Centers that award grants. Extramural grants account for approximately 84 percent of NIH''s 29 billion budget. These are awarded to investigators throughout the U.S. and abroad. Approximately 10 percent of the NIH budget supports NIH intramural investigators, NIH staff who conduct research. | biomedical research, grant |
has parent organization: National Institutes of Health is parent organization of: All About Grants Podcast is parent organization of: National Institutes of Health Research Portfolio Online Reporting Tool |
NIH | nif-0000-00487 | SCR_006547 | NIH Office of Extramural Research | 2026-08-08 11:58:46 | 291 | |||||||
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NIDDK Central Repository Resource Report Resource Website 50+ mentions |
NIDDK Central Repository (RRID:SCR_006542) | CDR, NIDDKCDR | biospecimen repository, material storage repository, data or information resource, database, service resource, storage service resource, data repository | NIDDK Central Repositories are two separate contract funded components that work together to store data and samples from significant, NIDDK funded studies. First component is Biorepository that gathers, stores, and distributes biological samples from studies. Biorepository works with investigators in new and ongoing studies as realtime storage facility for archival samples.Second component is Data Repository that gathers, stores and distributes incremental or finished datasets from NIDDK funded studies Data Repository helps active data coordinating centers prepare databases and incremental datasets for archiving and for carrying out restricted queries of stored databases. Data Repository serves as Data Coordinating Center and website manager for NIDDK Central Repositories website. | clinical supply resource, data, clinical, sample sharing, genotyping, genotype, phenotype, genetic analysis, data sharing, genetics, serum, plasma, stool, urine, dna, red blood cell, buffy coat, tissue, immortalized cell line, cell line, data set, digestive organ, kidney, diabetes, kidney disease, digestive disease, genome-wide association study, sequencing, FASEB list |
uses: DataCite is used by: NIDDK Information Network (dkNET) is used by: NIF Data Federation is used by: NIH Heal Project is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases lists: HEALTHY study lists: Nonalcoholic Steatohepatitis Clinical Research Network lists: HALT-C Trial lists: Type 1 Diabetes Genetics Consortium lists: TEDDY lists: Type 1 Diabetes TrialNet lists: Rare and Atypical Diabetes Network lists: Diabetes Prevention Program lists: Diabetes Prevention Program Outcomes Study lists: Restoring Insulin Secretion Consortium (RISE) lists: Epidemiology of Diabetes Interventions and Complications lists: Diabetes Control and Complications Trial lists: Treatment Options for type 2 Diabetes in Adolescents and Youth is listed by: One Mind Biospecimen Bank Listing is listed by: re3data.org is listed by: Biospecimens/Biorepositories: Rare Disease-HUB (RD-HUB) is listed by: NIDDK Information Network (dkNET) is related to: NCBI database of Genotypes and Phenotypes (dbGap) is related to: Peginterferon and Ribavirin for Pediatric Patients with Chronic Hepatitis C is related to: Chronic Renal Insufficiency Cohort Study has parent organization: RTI International |
NIDDK | PMID:23396299 PMID:21959867 PMID:16595012 |
Restricted | nlx_152673, r3d100010377 | https://doi.org/10.17616/R3WP48 | https://www.niddkrepository.org, | SCR_006542 | NIDDK Central Repository, National Institute of Diabetes and Digestive and Kidney Diseases Central Repository, NIDDKCentral Repositories | 2026-08-08 11:58:46 | 92 |
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