Searching the RRID Resource Information Network

Our searching services are busy right now. Please try again later

  • Register
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X

Leaving Community

Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.

No
Yes

Preparing word cloud

×

SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

Search

Type in a keyword to search

Filter by records added date
See new records

Options


Current Facets and Filters

  • Funding Agency:nimh (facet)

Facets


Recent searches

Snippet view Table view
Click the to add this resource to a Collection

291 Results - per page

Show More Columns | Download 291 Result(s)

Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Brain Observatory
 
Resource Report
Resource Website
Brain Observatory (RRID:SCR_010641) Brain Observatory service resource, data or information resource, biospecimen repository, video resource, material storage repository, storage service resource, topical portal, portal Formerly a topical portal studying the brain which collected and imaged 1000 human brains, the Brain Observatory has partnered with the Institute for Brain and Society to build virtual laboratories that will feed directly into the database of images and knowledge created in the context of the Human Brain Library. The Brain Observatory will also host exhibits, conferences, and events aimed at promoting a heightened awareness of brain research and how its results can benefit personal brain fitness and mental health. human, brain, visual cortex, neuroimaging has parent organization: University of California San Diego School of Medicine; California; USA Human immunodeficiency virus, NeuroAIDS, AIDS, Amnesia NIMH ;
NSF ;
The Dana Foundation ;
NEI
Public nlx_69083 http://thebrainobservatory.ucsd.edu/ SCR_010641 The Brain Observatory 2026-07-28 09:42:50 0
Neuroimaging in Python
 
Resource Report
Resource Website
10+ mentions
Neuroimaging in Python (RRID:SCR_013141) NIPY, software application, community building portal, data or information resource, software resource, software development environment, software development tool, portal Community site to make brain imaging research easier that aims to build software that is clearly written, clearly explained, a good fit for the underlying ideas, and a natural home for collaboration. brain, imaging, neuroimaging, analysis, python, fmri, fmri analysis, magnetic resonance is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: Python Programming Language
has parent organization: SourceForge
has parent organization: University of California at Berkeley; Berkeley; USA
has parent organization: Massachusetts Institute of Technology; Massachusetts; USA;
is parent organization of: Dipy
is parent organization of: NiLearn
is parent organization of: NIPY
is parent organization of: NiBabel
is parent organization of: Nipype
is parent organization of: Nitime
NIMH 5R01MH081909-02;
NIBIB 1R03EB008673-01
PMID:21897815 Revised BSD license nlx_149365 http://www.nitrc.org/projects/nipy-community http://www.nitrc.org/projects/nipype SCR_013141 NIPY Community 2026-07-28 09:43:11 24
BICCN
 
Resource Report
Resource Website
100+ mentions
BICCN (RRID:SCR_015820) BICCN data or information resource, organization portal, consortium, portal Consortium for the cell census in the brain. Integrated network of data generating centers, data archives, and data standards developers, with the goal of systematic multimodal brain cell type profiling and characterization. Emphasis of the BICCN is on the whole mouse brain with demonstration of prototype feasibility for human and nonhuman primate brains. cell census, neuroscience, brain, brain initiative cell census network, whole mouse brain, uses: QuickNII
uses: HistoloZee
uses: CellLocator
uses: Semi-Manual Alignment to Reference Templates
uses: LoomPy
uses: Cytosplore Viewer
uses: Allen Human Brain Atlas: BrainSpan (Atlas of the Developing Brain)
uses: Blue Brain Cell Atlas
uses: Enhanced and Unified Anatomical Labeling for Common Mouse Brain Atlas
uses: Hippocampome.org
uses: Neuron Phenotype Ontology
uses: Brain Image Library
uses: Distributed Archives for Neurophysiology Data Integration
uses: NeuroMorpho.Org
uses: Azimuth
uses: Brain Observatory Storage Service and Database (BossDB)
uses: Optimus Pipeline
uses: scATAC Pipeline
uses: Smart-seq2 Single Nucleus Multi Sample Pipeline
uses: CEMBA MethylC Seq Pipeline
uses: Brain Architecture Project
uses: Single Cell Portal
uses: MorphoHub
uses: Enhanced and Unified Anatomical Labeling for Common Mouse Brain Atlas
uses: Mouse Connectome Project
uses: Allen Mouse Brain Reference Atlas
uses: Allen Mouse Brain Common Coordinate Framework
uses: Allen Human Reference Atlas, 3D, 2020
uses: NeMO Analytics
uses: ANTS - Advanced Normalization ToolS
uses: CloudReg
uses: Brainome portal
uses: CATlas
uses: MetaNeighbor
uses: Cell Annotation Platform
uses: cellxgene
uses: Neuroglancer
uses: Vaa3D
uses: QuickNII and VisuAlign
uses: Hi5App
uses: CloudVolume
uses: neuroXiv
uses: Brain Data Standards Ontology
uses: Pittsburgh Supercomputing Center
uses: Molecular Biosensor and Imaging Center
uses: Generative Diffeomorphic Mapping
uses: NIH NeuroBioBank
uses: NeMOarchive
lists: ccf_streamlines
is related to: Mouse Connectome Project
is related to: BarensLab Mini-Atlas
is related to: Cumulus
is related to: Pegasus
is related to: Cirrocumulus
is related to: Gene functional conservation across cell types and species
is related to: BRAIN Initiative Cell Atlas Network
is related to: ATAC Pipeline
is related to: Slide-seq Pipeline
is related to: Brain Knowledge Platform
has parent organization: Allen Institute
has parent organization: Allen Institute for Brain Science
provides: mBrainAligner
provides: BICCN Cell Registry
provides: Cell Type Knowledge Explorer
provides: Epiviz
has organization facet: BICCN Anatomy and Morphology Project
has organization facet: Cell Type Knowledge Explorer
has organization facet: mBrainAligner
has organization facet: Terra
has organization facet: Allen Brain Cell Atlas
has organization facet: Multiome Pipeline
has organization facet: Allen Software Development Kit
has organization facet: BICCN Imaging and analysis Techniques to Construct Cell Census Atlas of Human Brain
has organization facet: Allen Brain Map BICCN Data Catalog
has organization facet: snm3C Pipeline
has organization facet: Paired-Tag Pipeline
has organization facet: BuildIndices
has organization facet: MapMyCells
NIMH U19 MH114821;
NIMH U19 MH114830;
NIMH U19 MH114831
PMID:37390046 Restricted SCR_017266 SCR_015820 BICCN 2.0, BRAIN Initiative Cell Census Network, BRAIN Initiative Cell Census Network (BICCN) 2026-07-28 09:43:58 227
NeMOarchive
 
Resource Report
Resource Website
100+ mentions
NeMOarchive (RRID:SCR_016152) NeMO service resource, data repository, data or information resource, database, storage service resource Data repository specifically focused on storage and dissemination of omic data generated from BRAIN Initiative and related brain research projects. Data repository and archive for BCDC and BICCN project, among others. NeMO data include genomic regions associated with brain abnormalities and disease, transcription factor binding sites and other regulatory elements, transcription activity, levels of cytosine modification, histone modification profiles and chromatin accessibility. omic, neuroscience, neurobiology, bcbc, biccn, nih, brain, genomic, region, abnormal, transcription, factor, binding, site, chromatin, regulatory, element, data is used by: BRAIN Initiative Cell Atlas Network
is used by: BICCN
is recommended by: BRAIN Initiative
is related to: NeMO Analytics
has parent organization: University of Maryland School of Medicine; Maryland; USA
NIMH MH114788;
BRAIN Initiative
Free, Freely available https://data.nemoarchive.org/ SCR_016152 NeMO Archive, Neuroscience Multi-omic Data Archive, The Neuroscience Multi-Omic Archive, Neuroscience Multi-Omic Archive 2026-07-28 09:44:14 113
Mapping Population-based Structural Connectomes
 
Resource Report
Resource Website
Mapping Population-based Structural Connectomes (RRID:SCR_016232) software application, software resource, data analysis software, data processing software Data analysis software that can simultaneously characterize a large number of white matter bundles within and across different subjects for group analysis. It has three major components: construction of the structural connectome for the whole brain, low-dimensional representation of streamlines in each connection, and multi-level connectome analysis. dwi, t1, tractography, algorithm, white matter, bundle, gray matter, shape, analysis, network, workflow NIMH MH086633;
NIMH MH092335;
NSF SES-1357666;
NSF DMS-1407655;
CPRIT RR150054;
NSF DMS1127914
Free for non-commercial use, Available for download SCR_016232 2026-07-28 09:44:12 0
Hippocampal Slice Wave Animations
 
Resource Report
Resource Website
Hippocampal Slice Wave Animations (RRID:SCR_008372) software application, animation software, resource, data or information resource, software resource, data processing software, data visualization software, simulation software, topical portal, portal THIS RESOURCE IS NO LONGER IN SERVICE, documented on January 29, 2013. Supplemental data for the paper Changes in mitochondrial function resulting from synaptic activity in the rat hippocampal slice, by Vytautas P. Bindokas, Chong C. Lee, William F. Colmers, and Richard J. Miller that appears in the Journal of Neuroscience June 15, 1998. You can view digital movies of changes in fluorescence intensity by clicking on the title of interest. animation, hippocampal, hippocampus, mitochondrial, movie, neuroscience, rat, slice, wave MRC of Canada MT10520;
NIDA DA02575;
NIDA DA02121;
NIMH MH40165;
NIDDK DK42086;
NIDDK DK44840;
NINDS NS-33502;
NIGMS 5T32GM07151-22;
NICHD HD07009
PMID:9614233 THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-25609 SCR_008372 GIF Animations 2026-07-28 09:42:19 0
Emergent
 
Resource Report
Resource Website
1+ mentions
Emergent (RRID:SCR_008500) Emergent software application, narrative resource, data or information resource, software resource, wiki, simulation software emergent is a comprehensive, full-featured neural network simulator that allows for the creation and analysis of complex, sophisticated models of the brain in the world. With an emphasis on qualitative analysis and teaching, it also supports the workflow of professional neural network researchers. Its high level drag-and-drop programming interface, built on top of a scripting language that has full introspective access to all aspects of networks and the software itself, allows one to write programs that seamlessly weave together the training of a network and evolution of its environment without ever typing out a line of code. Networks and all of their state variables are visually inspected in 3d, allowing for a quick visual regression of network dynamics and robot behavior. This same 3d world sports a highly accurate Newtonian physics simulation, allowing you to create rich robotics simulations (for example, a car). As a direct descendant of PDP (1986) and PDP (1999), emergent has been in development for decades. In the most recent versions available strive to distill it down to its essential elements. Those that take the time to learn the best practices will be rewarded with the ability to create and understand the most complicated neural models ever published. neural, simulator, network, analysis, software, simulation, physics, newtonian is related to: PDP++ Software Home Page
has parent organization: University of Colorado Boulder; Colorado; USA
NIMH R01 MH069597-01;
NIMH MH47566;
DARPA/ONR N00014-05-1-0880;
ONR N00014-03-1-0428
nif-0000-30515 SCR_008500 Emergent Neural Network Simulation System, PDP++ 2026-07-28 09:42:20 4
Brain's Inner Workings: Activities for Grades 9 through 12
 
Resource Report
Resource Website
1+ mentions
Brain's Inner Workings: Activities for Grades 9 through 12 (RRID:SCR_008842) Brain's Inner Workings data or information resource, narrative resource, video resource, training material This comprehensive free collection of multimedia resources and inquiry-based activities tied to the National Science Education Standards help teachers and students learn about the structure, function and cognitive aspects of the human brain. The packet includes a teacher's manual, student manual, DVD of videos, and a CDROM of accompanying materials. high school, brain, manual, student, teacher, brain structure, brain function, cognition, cerebral cortex, nerve cell, neurotransmitter, imaging, mri, mental disease, k-12 has parent organization: NIMH Educational Resources NIMH nlx_146227 SCR_008842 The Brain's Inner Workings: Activities for Grades 9 through 12, Brains Inner Workings: Activities for Grades 9 through 12 2026-07-28 09:42:24 2
Mango
 
Resource Report
Resource Website
100+ mentions
Mango (RRID:SCR_009603) Mango software application, software resource, data processing software, data visualization software, image processing software, image analysis software A viewer for medical research images that provides analysis tools and a user interface to navigate image volumes. There are three versions of Mango, each geared for a different platform: * Mango ? Desktop ? Mac OS X, Windows, and Linux * webMango ? Browser ? Safari, Firefox, Chrome, and Internet Explorer * iMango ? Mobile ? Apple iPad Key Features: * Built-in support for DICOM, NIFTI, Analyze, and NEMA-DES formats * Customizable: Create plugins, custom filters, color tables, file formats, and atlases * ROI Editing: Threshold and component-based tools for painting and tracing ROIs * Surface Rendering: Interactive surface models supporting cut planes and overlays * Image Registration: Semi-automatic image coregistration and manual transform editing * Image Stacking: Threshold and transparency-based image overlay stacking * Analysis: Histogram, cross-section, time-series analysis, image and ROI statistics * Processing: Kernel and rank filtering, arithmetic/logic image and ROI calculators analyze, atlas application, console (text based), dicom, gifti, java, linux, macos, microsoft, magnetic resonance, nifti, os independent, platform, posix/unix-like, quantification, region of interest, registration, rendering, segmentation, spatial transformation, statistical operation, sunos/solaris, surface analysis, temporal transformation, visualization, volumetric analysis, web environment, win32 (ms windows), windows, windows vista, windows xp is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: University of Texas Health Science Center at San Antonio; Texas; USA
NIBIB P01-EB01955;
NIBIB R01-EB015314-01a1;
NIMH R01-MH074457
Free nlx_155804 http://www.nitrc.org/projects/mango SCR_009603 Multi-image Analysis GUI 2026-07-28 09:42:23 461
GTRACT
 
Resource Report
Resource Website
1+ mentions
GTRACT (RRID:SCR_009651) GTRACT software application, software toolkit, software resource, data processing software, image processing software, image analysis software A Diffusion Tensor fiber tracking software suite that includes streamline tracking tools. The fiber tracking includes a guided tracking tool that integrates apriori information into a streamlines algorithm. This suite of programs is built using the NA-MIC toolkit and uses the Slicer3 execution model framework to define the command line arguments. These tools can be fully integrated with Slicer3 using the module discovery capabilities of Slicer3. NOTE: All new development is being managed in a github repository. Please visit, https://github.com/BRAINSia/BRAINSTools c++, dicom, macos, microsoft, modeling, morphology, magnetic resonance, nifti, posix/unix-like, quantification, tensor metric, tractography, windows, dti, diffusion tensor fiber tracking, fiber tracking, nrrd, algorithm, connectivity is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: 3D Slicer
has parent organization: University of Iowa; Iowa; USA
Aging NARSAD ;
NINDS R01NS050568-01A2S1;
NINDS 5R01NS040068-04;
NIMH 5R01MH063405-04;
NIMH 5R01MH031593-23;
NIMH 2R01MH040856-17A2;
NIA 5K23AG020649-03;
NIDCR 5R01DE014399-04
PMID:16631385 BSD License nlx_155992 SCR_009651 Guided Tensor Restore Anatomical Connectivity Tractography 2026-07-28 09:42:28 2
Collaboratory of AIDS Researchers for Eradciation (CARE)
 
Resource Report
Resource Website
Collaboratory of AIDS Researchers for Eradciation (CARE) (RRID:SCR_013681) CARE data or information resource, organization portal, consortium, portal The Collaboratory of AIDS Researchers for Eradication (CARE) is a consortium of scientific experts in the field of HIV latency from several U.S. and European academic research institutions as well as Merck Research Laboratories working together to find a cure for HIV. AIDS, HIV, drug development, data-sharing enabler, is related to: University of North Carolina at Chapel Hill School of Medicine; North Carolina; USA
is related to: Gladstone Institute of Neurological Disease
is related to: UCSF School of Medicine; California; USA
is related to: Case Western Reserve University; Ohio; USA
is related to: Merck
is related to: UC Davis School of Medicine; California; USA
is related to: University of California at San Diego; California; USA
is related to: University of Utah School of Medicine; Utah; USA
is related to: University of Minnesota Twin Cities; Minnesota; USA
NIAID ;
NIMH
SCR_013681 2026-07-28 09:43:17 0
Northwestern University Schizophrenia Data and Software Tool (NUSDAST)
 
Resource Report
Resource Website
Northwestern University Schizophrenia Data and Software Tool (NUSDAST) (RRID:SCR_014153) NUSDAT image collection, data or information resource, database A repository of schizophrenia neuroimaging data collected from over 450 individuals with schizophrenia, healthy controls and their respective siblings, most with 2-year longitudinal follow-up. The data include neuroimaging data, cognitive data, clinical data, and genetic data. database, neuroimaging, clinical, cognitive, genetic, schizophrenia, longitudinal uses: CAWorks
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: Northwestern University; Illinois; USA
Schizophrenia NIMH 1R01 MH084803;
NIMH 1U01 MH097435;
NIMH P50 MH071616;
NIMH R01 MH056584;
NCRR P41 RR15241;
NIGMS U24 GM104203;
NIH Bio-Informatics Research Network Coordinating Center
Available to the research community SCR_014153 Northwestern University Schizophrenia Data and Software Tool 2026-07-28 09:43:44 0
Spatio-temporal transcriptome of the human brain
 
Resource Report
Resource Website
Spatio-temporal transcriptome of the human brain (RRID:SCR_013743) data or information resource, document, narrative resource A research paper with supplementary materials reporting the generation and analysis of exon-level transcriptome and associated genotyping data. The experiment represented both males and females of multiple ethnicities and examines gene regulation and expression in different areas of the brain. A data set on the human brain transcriptome as well as insights into the transcriptional foundations of human neurodevelopment is provided. spatio-temporal, transcriptome data, brain regions, human brain, gene expression, gene regulation is related to: Human Brain Transcriptome
has parent organization: Yale University; Connecticut; USA
Kavil Foundation ;
NARSAD ;
James S. McDonnell Foundation Scholar Award ;
NIMH MH081896;
NIMH MH089929;
NINDS NS054273
PMID:22031440 Public, Free SCR_013743 2026-07-28 09:43:18 0
MEGSIM
 
Resource Report
Resource Website
MEGSIM (RRID:SCR_002420) MEGSIM software application, data set, data or information resource, software resource, simulation software Realistic simulated MEG datasets ranging from basic sensory to oscillatory sets that mimic functional connectivity; as well as basic visual, auditory, and somatosensory empirical sets. The simulated sets were created for the purpose of testing analysis algorithms across the different MEG systems when the truth is known. MEG baseline recordings were obtained from 5 healthy participants, using three MEG systems: VSM/CTF Omega, Elekta Neuromag Vectorview, 4-D Magnes 3600. Simulated signals were embedded within the CTF and Neuromag 306 baseline recordings (4-D to be added). Participant MRIs are available. Averaged simulation files are available as netcdf files. Neuromag 306 averaged simulations are also available in fif format. Also available: single trials of data where the simulated signal is jittered about a mean value, continuous fif files where the simulated signal is marked by a trigger, and simulations with oscillations added to mimic functional connectivity. eeg, meg, electrocorticography, forward - inverse, mri, meg modeling, model, simulation, os independent, test data, image collection is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: Mind Research Network
NIMH R21MH080141 PMID:22068921 Free, Freely available nlx_155793 http://www.nitrc.org/projects/megsim SCR_002420 2026-07-28 09:40:26 0
PIVOT software
 
Resource Report
Resource Website
10+ mentions
PIVOT software (RRID:SCR_017210) PIVOT software application, software resource, data analysis software, data processing software Software R package for interactive analysis and visualization of transcriptomics data. Operating systems are macOS, Linux, Windows. Interactive, analysis, visualization, transcriptomics, data is related to: University of Pennsylvania; Philadelphia; USA NIMH U01 MH098953 PMID:29304726 Free, Available for download, Freely available SCR_017210 Platform for Interactive analysis and Visualization Of Transcriptomics, PIVOT, KimLabIDV 2026-07-28 09:44:31 17
Neuron Phenotype Ontology
 
Resource Report
Resource Website
1+ mentions
Neuron Phenotype Ontology (RRID:SCR_017403) NPO controlled vocabulary, data or information resource, ontology An ontology for describing the complex phenotypes of neurons. Cell, type, phenotype, neuron, ontology is used by: BICCN
is provided by: NIFSTD
NIMH U24 MH114827;
BRAIN Initiative
Free, Freely available SCR_017403 2026-07-28 09:44:33 2
Brain Image Library
 
Resource Report
Resource Website
10+ mentions
Brain Image Library (RRID:SCR_017272) BIL service resource, data or information resource, storage service resource, data repository Public, NIH-funded repository and analysis ecosystem for brain microscopy data, designed to store, share, and process massive volumetric datasets. It enables researchers to access whole-brain images, neuron morphologies, and spatial data without needing to download, fostering collaborative discovery. Used to deposit, analyze, mine, share and interact with large brain image datasets. archive, dataset, confocal, microscopy, brain, image, data, brain microscopy data, is used by: BICCN
is used by: BRAIN Initiative Cell Atlas Network
is recommended by: National Library of Medicine
is recommended by: BRAIN Initiative
is listed by: DataCite
is listed by: re3data.org
is related to: BRAIN Initiative
is related to: Allen Institute for Brain Science
works with: CBI BrAinPI
is organization facet of: BRAIN Initiative Cell Atlas Network
BRAIN Initiative ;
NIMH R24 MH114793
PMID:38187527 Free, Available for download, Freely available DOI:10.17616/R31NJN9G, DOI:10.35077, r3d100013956 https://doi.org/10.17616/R31NJN9G, https://doi.org/10.17616/r31NJN9G, https://doi.org/10.35077/, https://dx.doi.org/10.35077/, https://doi.org/10.17616/R31NJN9G SCR_017272 Brain Image Library 2026-07-28 09:44:28 16
Brain Observatory Storage Service and Database (BossDB)
 
Resource Report
Resource Website
10+ mentions
Brain Observatory Storage Service and Database (BossDB) (RRID:SCR_017273) BossDB, bossDB, BOSS DB service resource, data or information resource, data repository, database, image, storage service resource, 3d spatial image BossDB (Brain Observatory Storage Service and Database) is a cloud-based ecosystem for the storage and management of public large-scale volumetric neuroimaging and connectomics datasets. This includes volumetric Electron Microscopy and X-Ray Micro/Nanotomography data with support for multi-channel image data, segmentations, annotations, meshes, and connectomes. BossDB integrates with community resources for data access, processing, visualization, and analysis, and includes an API that enables metadata management, rendering, datatype conversions, and ingest. Johns Hopkins University Applied Physics Laboratory, JHU/APL, database, electron microscopy, xray, data, storage, archive, BRAIN Initiative, EM, XRM, XNH, ecosystem is used by: BICCN
is recommended by: National Library of Medicine
is recommended by: BRAIN Initiative
is related to: Scalable Analytics for Brain Exploration Research
is related to: Ecosystem for Multi-modal Brain-behavior Experimentation and Research
has parent organization: BRAIN Initiative
has parent organization: Johns Hopkins University; Maryland; USA
BRAIN Initiative ;
NIMH R24 MH114785
DOI:10.1101/217745 Open https://github.com/jhuapl-boss/boss/ SCR_017273 Brain Observatory Storage Service, bossDB, Block and Object Storage Service, BOSSDB, Block and Object Storage Service Database, Brain Observatory Storage Service and Database, BossDB 2026-07-28 09:44:32 27
gene Expression Analysis Resource
 
Resource Report
Resource Website
50+ mentions
gene Expression Analysis Resource (RRID:SCR_017467) gEAR service resource, data or information resource, software resource, production service resource, analysis service resource, portal Portal for visualization and analysis of multi omic data in public and private domains. Enables upload, visualization and analysis of scRNA-seq data. Visualization, analysis, multi, omic, data, upload, scRNA-seq, BRAIN Initiative is recommended by: BRAIN Initiative
has parent organization: University of Maryland School of Medicine; Maryland; USA
NIMH MH114788;
NIDCD R01 DC013817;
NIMH R24 MH114815;
Hearing Health Foundation (Hearing Restoration Project)
Restricted SCR_017467 gene Expression Analysis Resource 2026-07-28 09:44:30 76
TReNA
 
Resource Report
Resource Website
TReNA (RRID:SCR_017458) software application, data analysis software, software resource, data processing software, network analysis software Methods for reconstructing transcriptional regulatory networks. Reconstructing, transcriptional, regulatory, network, BRAIN Initiative is recommended by: BRAIN Initiative NIMH MH114788 Free, Available for download, Freely available SCR_017458 2026-07-28 09:44:36 0

Can't find your Tool?

We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.

Can't find the RRID you're searching for? X
X
  1. SPARC Anatomical Working Group Resources

    Welcome to the SPARC SAWG Resources search. From here you can search through a compilation of resources used by SPARC SAWG and see how data is organized within our community.

  2. Navigation

    You are currently on the Community Resources tab looking through categories and sources that SPARC SAWG has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.

  3. Logging in and Registering

    If you have an account on SPARC SAWG then you can log in from here to get additional features in SPARC SAWG such as Collections, Saved Searches, and managing Resources.

  4. Searching

    Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:

    1. Use quotes around phrases you want to match exactly
    2. You can manually AND and OR terms to change how we search between words
    3. You can add "-" to terms to make sure no results return with that term in them (ex. Cerebellum -CA1)
    4. You can add "+" to terms to require they be in the data
    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Collections

    If you are logged into SPARC SAWG you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  6. Facets

    Here are the facets that you can filter the data by.

  7. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.