Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hema-Quebec Resource Report Resource Website 1+ mentions |
Hema-Quebec (RRID:SCR_004700) | nonprofit organization | Hema-Quebec''s mission is to efficiently provide adequate quantities of safe, optimal blood components, substitutes, human tissues and cord blood to meet the needs of all Quebecers; provide and develop expertise along with specialized and innovative services and products in the fields of transfusion medicine and human tissue transplantation. Hema-Quebec is driven by the commitment, support and recognition of its employees as well as the trust of its partners to remain the standard of quality and innovation with respect to the safe procurement of blood products, human tissues and stem cells. | is listed by: One Mind Biospecimen Bank Listing | Hema-Quebec Foundation | nlx_69414, ISNI: 0000 0001 2111 8890, grid.292497.3, Wikidata: Q3144906 | https://ror.org/008jvv944 | SCR_004700 | 2026-07-25 12:05:53 | 2 | |||||||||
|
University of Colorado Denver; Colorado; USA Resource Report Resource Website 1+ mentions |
University of Colorado Denver; Colorado; USA (RRID:SCR_004662) | CU Denver | university | University of Colorado Denver is a public research university in Denver. It is part of the University of Colorado system. |
is related to: Clinical and Translational Science Awards Consortium is related to: University of Colorado Diabetes Research Center has parent organization: University of Colorado; Colorado; USA is parent organization of: Hanalyzer is parent organization of: PhenoGen Informatics is parent organization of: GeneSpeed- A Database of Unigene Domain Organization is parent organization of: University of Colorado School of Medicine; Colorado; USA is parent organization of: University of Colorado Denver Labs and Facilities is parent organization of: CU Denver iPSC Core is parent organization of: CU Denver Transgenic and Gene Targeting Core is parent organization of: CU Denver High Throughput and High Content Screening Core Facility is parent organization of: CU Denver Advanced Histology Services is parent organization of: U-Compare |
nlx_54335, GRID grid.241116.1; ISNI 0000000107903411; Crossref Funder ID 100010346; Wikidata Q1468161 | https://ror.org/02hh7en24 | SCR_004662 | University of Colorado Denver Anschutz Medical Campus, University of Colorado Health Sciences Center; Colorado; USA, University of Colorado Denver Anschutz Medical Campus;Colorado; USA, University of Colorado Health Sciences Center, University of Colorado Denver | 2026-07-25 12:05:55 | 1 | ||||||||
|
PSP Association Resource Report Resource Website 1+ mentions |
PSP Association (RRID:SCR_004655) | PSP Association | nonprofit organization | The PSP Association is dedicated to the support of people with Progressive Supranuclear Palsy (PSP) and those who care for them. We also support those with the related, but rarer, disease Cortico Basal Degeneration (CBD). We fund research to better understand the possible causes of PSP and CBD, to find ways to achieve earlier and better diagnosis and to develop treatments that could potentially slow down, or even halt, the progression of these diseases. We support patients, families and carers through the services we offer on a UK-wide basis, through our Nurse Specialist helpline, our Local Support Groups, our publications (including the comprehensive Carers'' Information Pack) and our Annual Symposium for carers and therapists. We raise awareness of PSP and CBD on a local and national level and work in partnership with the relevant bodies and umbrella organisations in the UK to seek to make a positive difference to the lives of people with PSP and CBD. Registered charity numbers: England & Wales 1037087 / Scotland: SC041199. | progressive supranuclear palsy, cortico basal degeneration | grid.481174.f, Crossref funder ID: 501100008177, ISNI: 0000 0000 9330 6674, nlx_143855 | https://ror.org/05jmp0y43 | SCR_004655 | Progressive Supranuclear Palsy Association | 2026-07-25 12:05:53 | 2 | ||||||||
|
AbundanceBin Resource Report Resource Website 1+ mentions |
AbundanceBin (RRID:SCR_004648) | AbundanceBin | software resource | An abundance-based software tool for binning metagenomic sequences, such that the reads classified in a bin belong to species of identical or very similar abundances. AbundanceBin also gives estimations of species abundances and their genome sizes -two important characteristic parameters for a microbial community. | metagenome, sequence |
is listed by: OMICtools has parent organization: Indiana University; Indiana; USA |
PMID:21385052 | Acknowledgement requested, Free, Public | OMICS_01471 | SCR_004648 | 2026-07-25 12:05:55 | 6 | |||||||
|
Susan G. Komen for the Cure Resource Report Resource Website 10+ mentions |
Susan G. Komen for the Cure (RRID:SCR_004842) | Susan G. Komen | funding resource | Susan G. Komen for the Cure is the global leader of the breast cancer movement, having invested more than $1.9 billion since inception in 1982. As the world''s largest grassroots network of breast cancer survivors and activists, we''re working together to save lives, empower people, ensure quality care for all and energize science to find the cures. Thanks to events like the Susan G. Komen Race for the Cure and the Susan G. Komen 3-Day for the Cure, and generous contributions from our partners, sponsors and fellow supporters, we have become the largest source of nonprofit funds dedicated to the fight against breast cancer in the world. | is parent organization of: Susan G. Komen Tissue Bank | Wikidata: Q246898, grid.428834.1, nlx_82488, Crossref funder ID: 100000869, ISNI: 0000 0001 0241 5320 | https://ror.org/02nadbe75 | SCR_004842 | Susan G. Komen | 2026-07-25 12:05:55 | 24 | ||||||||
|
BMA Biomedicals Resource Report Resource Website 100+ mentions |
BMA Biomedicals (RRID:SCR_004833) | commercial organization | An Antibody supplier | nlx_152319 | SCR_004833 | 2026-07-25 12:05:54 | 174 | ||||||||||||
|
Globus Medical, Inc. Resource Report Resource Website 1+ mentions |
Globus Medical, Inc. (RRID:SCR_004836) | Globus | commercial organization | A privately held spinal company that is driving significant technological advancements across a complete suite of spinal products. Founded in 2003, Globus'' single-minded focus on advancing spinal surgery has made it the fastest growing company in the history of orthopedics. Globus is driven to utilize superior engineering and technology to achieve pain free, active lives for all patients with spinal disorders. The ultimate goal at Globus is to deliver innovation by utilizing superior engineering and technology to help improve patients'' lives. This clinical inspiration is central to every endeavor we undertake. We have developed a Spine Innovation Engine to focus our efforts on delivering industry leading solutions to surgeons and their patients. Our Spine Innovation Engine has developed a portfolio that includes a comprehensive line of technologically-advanced spine products. To date we have released over 50 major products and have over 30 more in various stages of development. Clinical Studies are the foundation for advancing innovative spine care and Globus is committed to a robust investment into prospective and retrospective clinical trials to evaluate the safety and efficacy of our products. Globus is currently conducting several FDA-approved Investigational Device Exemption (IDE) clinical studies. | minimally invasive, motion preservation, cervical, intervertebral fusion, thoracolumbar, biomaterial, spinal cord, orthopedics | Spinal cord disorder | nlx_81975, ISNI: 0000 0004 0376 7450, grid.459811.0 | https://ror.org/04x4hjg39 | SCR_004836 | Globus Medical | 2026-07-25 12:05:55 | 2 | |||||||
|
flowQB Resource Report Resource Website |
flowQB (RRID:SCR_002144) | software resource | A fully automated R Bioconductor package to calculate automatically the detector efficiency (Q), optical background (B) and intrinsic CV of the beads. | software package, mac os x, unix/linux, windows, r, flow cytometry |
is listed by: OMICtools has parent organization: Bioconductor |
Free, Available for download, Freely available | OMICS_05610 | http://www.bioconductor.org/packages/release/bioc/html/flowQB.html | SCR_002144 | B and CVinstrinsic calculations, flowQB - Automated Quadratic Characterization of Flow Cytometer Instrument Sensitivity: Q, flowQB: Automated Quadratic Characterization of Flow Cytometer Instrument Sensitivity: Q | 2026-07-25 12:05:17 | 0 | |||||||
|
Leica: TCS SPE Resource Report Resource Website 10+ mentions |
Leica: TCS SPE (RRID:SCR_002140) | TCS SPE | instrument resource | High resolution, compact and robust confocal that enables immunohistochemical colocalization analysis of florescent markers. Leica TCS SPE confocal point-scanning, spectral system for fluorescence imaging of live or fixed cells. | confocal microscope, imaging, instrument, equipment, hardware | has parent organization: Leica Microsystems | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_002140.pdf | SciRes_000154 | http://www.leica-microsystems.com/fileadmin/downloads/Leica%20TCS%20SPE/Brochures/Leica%20TCS%20SPE-Brochure_EN.pdf | SCR_002140 | Leica TCS SPE confocal microscope | 2026-07-25 12:05:17 | 32 | |||||
|
miso-lims Resource Report Resource Website 10+ mentions |
miso-lims (RRID:SCR_002259) | MISO | software resource | Open source software for a Laboratory Information Management System (LIMS) for NGS sequencing centres. | laboratory information management system, ngs sequencing, lims | is listed by: OMICtools | Open Source, Free | OMICS_01007 | SCR_002259 | MISO: An open-source LIMS for NGS sequencing centres, MISO: An open source LIMS for small-to-large scale sequencing centres | 2026-07-25 12:05:19 | 20 | |||||||
|
University of Alaska Fairbanks; Alaska; USA Resource Report Resource Website |
University of Alaska Fairbanks; Alaska; USA (RRID:SCR_002251) | UAF | university | Public research university in Fairbanks, Alaska that offers degree programs in engineering, liberal arts, fisheries and ocean sciences, and rural and community development. | university in alaska, fisheries, ocean sciences, rural and community development, engineering |
is parent organization of: Alaska Climate Research Center is parent organization of: Alaska Satellite Facility is parent organization of: UAF Alaska Stable Isotope Facility is parent organization of: UAF Animal Quarters Core Laboratory is parent organization of: UAF Community Engagement and Clinical Support Core is parent organization of: UAF DNA Core Laboratory is parent organization of: UAF Epidemiology and Biostatistics Core Laboratory is parent organization of: UAF Nutrition and Physical Activity Core is parent organization of: UAF Optical and Tissue Culture Core is parent organization of: University of Alaska Fairbanks Genomics Core Facility |
Public | grid.70738.3b, Crossref funder ID:100005921, nlx_156102, ISNI:0000 0004 1936 981X, Wikidata:Q1285262 | https://ror.org/01j7nq853 | SCR_002251 | University of Alaska Fairbanks, UA Fairbanks | 2026-07-25 12:05:18 | 0 | ||||||
|
Kindai University School of Medicine; Osaka; Japan Resource Report Resource Website |
Kindai University School of Medicine; Osaka; Japan (RRID:SCR_002258) | university | Medical school division of Kindai University with a resident-centered approach to medicine. | medical school in japan, resident centered medicine |
has parent organization: Kindai University; Osaka; Japan is parent organization of: BrainStars |
nlx_149307 | http://nasc.in/ocenia/index.php?option=com_content&view=article&id=28:kinki-university-school-of-medicine-&catid=1:japan | SCR_002258 | Kinki University School of Medicine | 2026-07-25 12:05:18 | 0 | ||||||||
|
flowFit Resource Report Resource Website 1+ mentions |
flowFit (RRID:SCR_002286) | software resource | A Bioconductor package designed to perform quantitative analysis of cell proliferation in tracking dye-based experiments. The package uses an R implementation of the Levenberg-Marquardt algorithm (minpack.lm) to fit a set of peaks (corresponding to different generations of cells) over the proliferation-tracking dye distribution in a FACS experiment. | software package, mac os x, unix/linux, windows, r, cell based assay, flow cytometry |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:24681909 | Artistic License, v2 | OMICS_05601 | SCR_002286 | flowFit - Estimate proliferation in cell-tracking dye studies | 2026-07-25 12:05:19 | 4 | |||||||
|
Tokyo Metropolitan Institute of Medical Science; Tokyo; Japan Resource Report Resource Website |
Tokyo Metropolitan Institute of Medical Science; Tokyo; Japan (RRID:SCR_002203) | institution | Scientific institute in Japan that promotes project-based research, targeted research initiatives for clinically-relevant questions on cancer, and dissemination of information to the research community and public. | research promotion, institute of science, scientific institute in japan | is parent organization of: Digital Brain Atlas of the Common Marmoset | Free, Freely available | grid.272456.0, nlx_144090 | https://ror.org/00vya8493 | http://rinshoken.igakuken.or.jp/eng/index_e.html | SCR_002203 | Tokyo Metropolitan Institute of Medical Science, RINSHOKEN | 2026-07-25 12:05:17 | 0 | ||||||
|
spliceR Resource Report Resource Website 10+ mentions |
spliceR (RRID:SCR_002280) | software resource | An easy-to-use R package for classification of alternative splicing and prediction of coding potential from RNA-seq data. | standalone software, unix/linux, mac os x, windows, c, r, differential expression, high throughput sequencing, rna-seq, rna-seq, visualization |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:24655717 | GNU General Public License, v2 or greater | OMICS_03514 | SCR_002280 | spliceR - Classification of alternative splicing and prediction of coding potential from RNA-seq data | 2026-07-25 12:05:19 | 25 | |||||||
|
neuRosim Resource Report Resource Website 10+ mentions |
neuRosim (RRID:SCR_002154) | neuRosim | software resource | Software package that allows users to generate fMRI time series or 4D data. Some high-level functions are created for fast data generation with only a few arguments and a diversity of functions to define activation and noise. For more advanced users it is possible to use the low-level functions and manipulate the arguments. | r, fmri, time series, 4d | has parent organization: CRAN | Free, Available for download, Freely available | SciRes_000194 | SCR_002154 | neuRosim: Functions to Generate fMRI Data Including Activated Data Noise Data and Resting State Data | 2026-07-25 12:05:20 | 20 | |||||||
|
BD Biosciences: LSR II Flow Cytometer Resource Report Resource Website 10+ mentions |
BD Biosciences: LSR II Flow Cytometer (RRID:SCR_002159) | LSR II Flow Cytometer | instrument resource | Benchtop high-performance cell sorter with multiple lazer, detector and fluoroscrome options. Allows detection of 12 parameters (10 color conjugates, forward and sideward scatter). | flow cytometer, instrument, equipment, hardware | has parent organization: BD Biosciences | THIS RESOURCE IS NO LONGER IN SERVICE | https://drive.google.com/file/d/1iqsXa8XNCYWutCswBRYBWluHGag0lOSx/view?usp=drivesdk | Model_Number_BD LSR II, SciRes_000152 | https://fccf.sitehost.iu.edu/pdf/BDLSRIIUserGuide.pdf | http://www.rockefeller.edu/fcrc/pdf/BD_LSRII_Brochure_SJ-0142-00.pdf | SCR_002159 | 2026-07-25 12:05:16 | 35 | |||||
|
FR-HIT Resource Report Resource Website 10+ mentions |
FR-HIT (RRID:SCR_002181) | FR-HIT | software resource | An efficient fragment recruitment software program for next generation sequences against microbial reference genomes. It produces similar sensitivity of BLASTN, but runs at a 100 times higher speed. The algorithm adopts a seeding heuristic strategy with overlapping k-mer hashing to locate candidate matching blocks on the reference sequences, and then apply an effective filtering within the candidate blocks to filter out blocks that do not meet the minimum criteria for containing an alignment with specified parameters. For each candidate block that passed the filter, the best matching sub-regions between a candidate block and a read are determined, and used subsequently by the banded Smith-Waterman algorithm to carry out the actual alignment efficiently, which will finally verify if this can be a valid recruitment hit. | metagenomics, bioinformatics, sequence analysis, next-generation sequencing |
is listed by: OMICtools has parent organization: Google Code |
Free, Freely available | OMICS_01850 | SCR_002181 | FR-HIT: Metagenome Fragment Recruitment at High Identity with Tolerance, Metagenome Fragment Recruitment at High Identity with Tolerance, Fragment Recruitment at High Identity with Tolerance | 2026-07-25 12:05:21 | 11 | |||||||
|
flowPlots Resource Report Resource Website |
flowPlots (RRID:SCR_002177) | software resource | Software for analysis plots and data class for gated flow cytometry data. | software package, mac os x, unix/linux, windows, r, cell based assay, flow cytometry, data representation, visualization |
is listed by: OMICtools has parent organization: Bioconductor |
Free, Available for download, Freely available | OMICS_05608 | SCR_002177 | flowPlots: analysis plots and data class for gated flow cytometry data | 2026-07-25 12:05:17 | 0 | ||||||||
|
metaRNASeq Resource Report Resource Website 10+ mentions |
metaRNASeq (RRID:SCR_002174) | software resource | Software package for meta-analysis of RNA-seq data. This package implements two p-value combination techniques (inverse normal and Fisher methods). It also provides a vignette explaining how to combine data from multiple RNA-seq experiments. | standalone software, unix/linux, mac os x, windows, r |
is listed by: OMICtools is related to: SMAGEXP has parent organization: CRAN |
PMID:24678608 | Free, Available for download, Freely available | OMICS_03527 | SCR_002174 | metaRNASeq: Meta-analysis of RNA-seq data | 2026-07-25 12:05:21 | 30 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the SPARC SAWG Resources search. From here you can search through a compilation of resources used by SPARC SAWG and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that SPARC SAWG has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on SPARC SAWG then you can log in from here to get additional features in SPARC SAWG such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into SPARC SAWG you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
