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Public research university in Adelaide, South Australia. It is known for its focus on research and emphasis on moving towards commercialization of research.
Proper citation: University of Adelaide; Adelaide; Australia (RRID:SCR_001075) Copy
https://www.athensresearch.com/
Commercial supplier of bioproducts for studies of inflammation, autoimmune disease, cancer, coronary disease, Alzheimer's Disease and more. These include antibodies, enzymes, coagulation factors, and assay kits.
Proper citation: Athens Research and Technology (RRID:SCR_001079) Copy
Commercial antibody supply company that focuses on providing antibodies for research in cardiovascular and atherosclerosis.
Proper citation: Academy Biomedical Company (RRID:SCR_001108) Copy
http://bioinformatics.mdanderson.org/main/BreakFusion
Software package written in Perl and C++ that provides a computational pipeline for identifying gene fusions from RNA-seq data.
Proper citation: BreakFusion (RRID:SCR_001102) Copy
Medical school division of Virginia Commonwealth University.
Proper citation: Virginia Commonwealth University School of Medicine; Virginia; USA (RRID:SCR_001061) Copy
The United States federal government Department of Education, which oversees policies on federal financial aid for education, collecting data and disseminating research, and working to promote key educational discussions and equal access to education.
Proper citation: U.S. Department of Education (RRID:SCR_001060) Copy
https://omictools.com/npebseq-tool
A method for non-parametric, empirical Bayesian-based analysis of RNA-seq count data.
Proper citation: NPEBseq (RRID:SCR_001014) Copy
A commercial antibody supplier that specializes in high-quality monoclonal antibodies and antigens for the diagnostic industry.
Proper citation: Hytest (RRID:SCR_001133) Copy
http://www.stat.brown.edu/ZWU/research.aspx
Borrows information across sequences to establish prior distribution of sample variation, so that biological variation can be accounted for even when replicates are not available.
Proper citation: ASC (RRID:SCR_001013) Copy
Commercial antibody supplier and developer for biomedical research. These products are compatible with use in flow cytometry and mass cytometry, immunoprecipitation and chip, western blotting, immunofluorescence microscopy, and quantitative multiplexing.
Proper citation: BioLegend (RRID:SCR_001134) Copy
Commercial supplier which provides antibodies, assay kits, biomarkers, and proteins.
Proper citation: NewEast Biosciences (RRID:SCR_001129) Copy
Public university in Utah, USA that provides undergraduate, master's, post graduate, graduate, and professional degree programs.
Proper citation: University of Utah; Utah; USA (RRID:SCR_001003) Copy
A federally chartered, private, coeducational, nonsectarian, historically black university in Washington, D.C. Howard University has graduate schools in many fields, including business, nursing, engineering, and medicine.
Proper citation: Howard University; Washington D.C. (RRID:SCR_001084) Copy
https://code.google.com/p/jmzml/
A Java application programming interface (API) for the Proteomics Standards Initiative mzML data standard.
Proper citation: jmzML (RRID:SCR_001119) Copy
http://bioconductor.org/packages/devel/bioc/html/massiR.html
Software that predicts the sex of samples in gene expression microarray datasets.
Proper citation: massiR (RRID:SCR_001157) Copy
https://www.phoenixpeptide.com/
Commercial antibody supplier that specializes in peptide-related products for research in obesity, cardiovascular disease, and diabetes.
Proper citation: Phoenix Pharmaceuticals (RRID:SCR_001141) Copy
http://www.ebi.ac.uk/~stijn/reaper/reaper.html
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23, 2022. Software program for demultiplexing, trimming and filtering short read sequencing data.
Proper citation: Reaper - Demultiplexing trimming and filtering sequencing data (RRID:SCR_001144) Copy
Software package that provides a pipeline for gene expression analysis (primarily for RNA-Seq data). The normalization function is specific for RNA-Seq analysis, but all other functions (Quality Control Figures, Differential Expression and Visualization, and Functional Enrichment via BD-Func) will work with any type of gene expression data.
Proper citation: sRAP (RRID:SCR_001297) Copy
https://rdrr.io/bioc/yaqcaffy/
Software package for quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets.
Proper citation: yaqcaffy (RRID:SCR_001295) Copy
Software to mimic various methylation level and bisulfite conversion rate in CpG, CHG and CHH context, respectively. It can also simulate genetic variations that are divergent from the reference sequence along with the sequencing error and quality distributions. In the output, both directional/non-directional, various read length, single/paired-end reads and alignment data in the SAM format can be generated. BSSim is a cross-platform BS-seq simulator offers output read datasets not only suitable for Illumina's Solexa, but also for Roche's 454 and Applied Biosystems' SOLiD.
Proper citation: BSSim (RRID:SCR_001212) Copy
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