Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://www.instructables.com/3D-Printed-Syringe-Pump-Rack/
System includes 3D Printed Syringe Pump Rack composed by 5 Syringe Pumps to have 2 continuous flow systems and one remaining pump. Syringe Pump is used to gradually administer small amounts of fluid to patient or for use in chemical and biomedical research. Main features include Open hardware/software, Extremely compact size ( 7cm movement range ), High precision lead screw and nut, Simple to use (command line interface), Simple to replicate, Minimal clean Design.
Proper citation: 3D Printed Multi Pump System (RRID:SCR_023575) Copy
https://github.com/JosePardoVazquez/RatHeadphones
Repository for highly controlled sound presentation in freely moving rats. Provides all necessary information for building, adjusting, and using Ratphones to reliably present auditory stimulation to freely moving rats. Used for 3D printing of headphones designed for auditory psychophysics in behaving rats.
Proper citation: RatHeadphones (RRID:SCR_023667) Copy
https://www.dropbox.com/s/wx7aicjh4is81om/HomeCageForelimbTask.py?dl=0
Software Python tool running on Raspberry Pi computer. Used for trial timing and data logging. Part of Autonomous Training of Forelimb Motor Task system.
Proper citation: Autonomous Training of a Forelimb Motor Task (RRID:SCR_021603) Copy
https://github.com/mauriciowr/OBAT
Software tool as part of Operant Box for Auditory Tasks system.
Proper citation: Operant Box for Auditory Tasks (RRID:SCR_021604) Copy
https://github.com/DepartmentofNeurophysiology/Matlab-Whisker-Tracker
Shared database of videos featuring juvenile and adult male rats and adult male mice exploring stationary objects.This dataset includes wide variety of experimental conditions including genetic, pharmacological, and sensory deprivation interventions to explore how active sensing behavior is modulated by different factors. Database of high speed videos of whisking behavior in freely moving rodents.Open source high speed infrared videography database to study principles of active sensing in freely navigating rodents.
Proper citation: Open Source Whisking Video Database (RRID:SCR_021407) Copy
https://www.eneuro.org/content/12/2/ENEURO.0444-24.2025
Low-cost implant for reliable diaphragm EMG recordings in awake, behaving rats.Diaphragm EMG implant.
Proper citation: Implant for Reliable Diaphragm EMG Recordings in Awake, Behaving Rats (RRID:SCR_026968) Copy
https://github.com/PTMonteiro/GoFish_Ajuwon_etal_2022
Bonsai code for running GOFish platform for behavioural experiments in fish.
Proper citation: GoFish Ajuwon etal 2022 (RRID:SCR_022511) Copy
https://edspace.american.edu/openbehavior/project/ort/
Open-source apparatus to enable continuous individual monitoring, training, and testing of rats without removing them from their social environment. This system utilizes RFID technology to track individual animals, minimizing human intervention and providing precise behavioral data.
Proper citation: One-rat Turnstile (RRID:SCR_025570) Copy
https://github.com/mmgxw3/pipetteFindingCNN
Software application for convolutional neural network that assesses pipette positioning before patch clamp is begun to minimize patch clamping errors in electrophysiology experiments. Used for detecting pipette positioning and making patch clamping procedures.
Proper citation: Pipette Finding CNN (RRID:SCR_024992) Copy
https://github.com/ZuAh/Custom-fitting-of-implants
Tutorial to custom-design and -fit implants to continuous and discontinuous skull surfaces. Universal Guide for Skull Extraction and Custom-Fitting of Implants to Continuous and Discontinuous Skulls.
Proper citation: Custom-fitting-of-implants (RRID:SCR_025270) Copy
https://github.com/MaSoMoTr/MaSoMoTr
Markerless video-based tool to simultaneously track two interacting mice of the same appearance in controlled settings for quantifying behaviors such as different types of sniffing, touching, and locomotion to improve tracking accuracy under these settings without increased human effort. It incorporates conventional handcrafted tracking and deep-learning-based techniques. The tool is trained on small number of manually annotated images from basic experimental setup and outputs body masks and coordinates of the snout and tail-base for each mouse.
Proper citation: Markerless Mouse Tracking for Social Experiments (RRID:SCR_025368) Copy
https://github.com/AdaptiveMotorControlLab/Camera_Control
Open source software package that allows video to be recorded in sync with behavior. Python GUI and scripts allows investigators to record from multiple imaging source camera feeds with associated timestamps for each frame. Python API to record video system timestamps from Imaging Source USB cameras. Package requires Windows 10, Anaconda, and Git, and is compatible with Imaging Source USB3 cameras. Part of Camera Control project.
Proper citation: Camera Control (RRID:SCR_021614) Copy
https://github.com/haiderlab/DP-Lick-Detector
Distribution package for Dual Port Lick Detector.Package includes files relevant to building lick detector.
Proper citation: Dual Port Lick Detector (RRID:SCR_021521) Copy
https://github.com/fdechaumont/lmt-analysis
Software package for Live Mouse Tracker analysis. lmt-analysis provides all analysis tools needed to extract information from tracking performed by live mouse tracker.
Proper citation: Live Mouse Tracker analysis (RRID:SCR_021505) Copy
https://github.com/wildrootlab/SHARCQ
Software tools to register histological section images and cell count locations to mouse brain atlas. Semi automated workflow and GUI for automated brain slice histology alignment, registration, and cell quantification. Used to explore Allen Mouse Brain Atlas, register asymmetric slice images to atlas using manual input, and analyze region of interest data by registering locations of fluorescently labeled cells to standardized regions of Atlas.
Proper citation: SHARCQ (RRID:SCR_022498) Copy
https://github.com/jellen44/AutomaticSleepScoringTool
Software pipeline for sleep researchers to perform automatic sleep scoring for rodents. Artificial neural network for automated behavioral state classification in rats.
Proper citation: AutomaticSleepScoringTool (RRID:SCR_022300) Copy
https://bitbucket.org/kloostermannerflab/
Open source software tool for closed loop neuroscientific experiments capable of sub-millisecond response latency over high-rate streaming data acquired from high-count multi-electrode arrays. Used for processing and controlling closed-loop neuroscience data.
Proper citation: Falcon (RRID:SCR_023199) Copy
https://rupertoverall.net/ColonyTrack/
Software R package to process raw data from ColonyRack system. In addition to generating pre processed data and quality control information, range of high level metrics are calculated together with convenient tools for analysis.
Proper citation: ColonyTrack (RRID:SCR_023026) Copy
https://github.com/vivian-imbriotis/rpg
Software Python package written for Raspberry Pi for displaying visual stimuli and to provide real time feedback on stimulus timing. High performance python library for displaying drifting gratings on Raspberry Pi 3.
Proper citation: Raspberry Pi Grating (RRID:SCR_023157) Copy
https://github.com/KimchiLab/OpBoxPhys
Open source electrophysiology hardware and software package for simultaneous EEG and EMG acquisition from multiple subjects.
Proper citation: OpBox (RRID:SCR_023269) Copy
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the SPARC SAWG Resources search. From here you can search through a compilation of resources used by SPARC SAWG and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that SPARC SAWG has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on SPARC SAWG then you can log in from here to get additional features in SPARC SAWG such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
You can save any searches you perform for quick access to later from here.
We recognized your search term and included synonyms and inferred terms along side your term to help get the data you are looking for.
If you are logged into SPARC SAWG you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the sources that were queried against in your search that you can investigate further.
Here are the categories present within SPARC SAWG that you can filter your data on
Here are the subcategories present within this category that you can filter your data on
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
