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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Wave Surfer project Resource Report Resource Website |
Wave Surfer project (RRID:SCR_021476) | portal, project portal, data or information resource | Project related to neurophysiology data acquisition and analysis.Included open source software application for neurophysiology data acquisition and analysis is provided by Howard Hughes Medical Institute Janelia Research Campus scientists. Program is based in MatLab, and evolved from earlier open source software package called Ephus. | Neurophysiology data acquisition, neurophysiology data analysis, neurophysiology data, MATLAB, OpenBehavior |
is listed by: OpenBehavior is related to: Wave Surfer |
Free, Freely available | SCR_021476 | Wave Surfer | 2026-07-27 09:36:23 | 0 | |||||||||
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Automated Classification of Self-grooming in Mice project Resource Report Resource Website 1+ mentions |
Automated Classification of Self-grooming in Mice project (RRID:SCR_021597) | portal, project portal, data or information resource | Portal provides protocol that implements JAABA, open source machine learning based behavior detection system; motr, open-source mouse trajectory tracking software; and bonsai, open source system capable of streaming and recording video. Together they use these tools to process videos of mice performing grooming behaviors in variety of behavioral setups. | grooming behavior, behavior detection protocol, JAABA behavior detection system, motr mouse trajectory tracking software, bonsai streaming and recording video, OpenBehavior | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2017.05.026 | Free, Freely available | SCR_021597 | Automated Classification of Self-grooming in Mice | 2026-07-27 09:36:24 | 1 | ||||||||
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Calcium Imaging data Analysis project Resource Report Resource Website 1+ mentions |
Calcium Imaging data Analysis project (RRID:SCR_021477) | CaImAn | portal, project portal, data or information resource | Project related to calcium imaging.Provides software library, CaImAn, for one and two-photon Calcium Imaging data Analysis. | calcium imaging analysis, movie handling, motion correction, source extraction, spike deconvolution, result visualization, OpenBehavior |
is listed by: OpenBehavior is related to: Calcium Imaging data Analysis |
DOI:10.7554/elife.38173 | Free, Freely available | SCR_021477 | Calcium Imaging data Analysis | 2026-07-27 09:36:21 | 1 | |||||||
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BonVision project Resource Report Resource Website |
BonVision project (RRID:SCR_021491) | portal, project portal, data or information resource | Project related to creating and controlling visual environments.Provided open source software package for creating and controlling visual environments was developed by University College London scientists. | Creating visual environments, controlling visual environments, Bonsai, 2D environment, 3D environments, OpenBehavior |
is listed by: OpenBehavior is related to: BonVision has parent organization: University College London; London; United Kingdom |
DOI:10.1101/2020.03.09.983775 | Free, Freely available | SCR_021491 | BonVision | 2026-07-27 09:36:24 | 0 | ||||||||
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craniobot Resource Report Resource Website |
craniobot (RRID:SCR_021609) | software resource, source code, software toolkit | Software tool as part of Craniobot system.Generates, sends, and receives commands to communicate with the Craniobot. | Software resource, OpenBehavior |
is listed by: OpenBehavior is related to: Craniobot project |
DOI:10.1038/s41598-018-37073-w | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/craniobot/ | SCR_021609 | craniobot | 2026-07-27 09:36:24 | 0 | |||||||
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Lick Instance Quantifier Home cage Device Resource Report Resource Website 1+ mentions |
Lick Instance Quantifier Home cage Device (RRID:SCR_023802) | LIQ HD | instrument resource, software resource, source code | Arduino code, 3D print design files, and tutorial video on how to build LIQ HD system. Open source tool for recording undisturbed two-bottle drinking behavior in home cage environment. All designs and software are open source to allow other researchers to build on the system and adapt LIQ HD to their animal home cages. | OpenBehavior, LIQ HD system, recording behavior, undisturbed two-bottle drinking behavior, | is listed by: OpenBehavior | PMID:36997312 | Free, Available for upload, Freely available | https://edspace.american.edu/openbehavior/project/liq-hd/ | SCR_023802 | , LIQ HD system, LIQ HD: Lick Instance Quantifier Home cage Device | 2026-07-27 09:37:02 | 2 | ||||||
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BrainWAVE Resource Report Resource Website 1+ mentions |
BrainWAVE (RRID:SCR_024396) | instrument resource, software resource, source code | Code to program and run flicker stimulation on BrainWAVE stimulator device. This brain oscillation stimulating software can be adapted across subjects and integrated into variety of experimental designs like electrophysiology, neuroimaging, EEG, MRI. Flexible method for noninvasive stimulation of brain rhythms across species. Used to measure effects of rhythmic brain activity on behavior. | OpenBehavior, Open source, noninvasive sensory flicker, deep brain stimulation, BrainWAVE stimulator device, measure effects of rhythmic brain activity, behavior | is listed by: OpenBehavior | PMID:36754625 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/brainwave/ | SCR_024396 | , Brain Wide-spectrum Audio/Visual Exposure, BrainWAVE: Noninvasive Rhythm Stimulation | 2026-07-27 09:37:07 | 6 | |||||||
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HFOApp Resource Report Resource Website |
HFOApp (RRID:SCR_024864) | software application, software resource, data processing software, data analysis software | Software for detecting and identifying high frequency oscillations observed in EEG recordings. MATLAB based graphical user interface for High Frequency Oscillation marking. | OpenBehavior, High Frequency Oscillation marking, detecting and identifying high frequency oscillations, EEG recordings, | is listed by: OpenBehavior | PMID:34544760 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/hfoapp/ | SCR_024864 | High Frequency Oscillation App | 2026-07-27 09:37:14 | 0 | |||||||
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ghostipy Resource Report Resource Website |
ghostipy (RRID:SCR_026231) | 1d time-series analysis software, data analysis software, software resource, source code, software application, time-series analysis software, data processing software | Software signal processing and spectral analysis toolbox designed for local field potential recordings. | OpenBehavior, neuroscience, signal processing, spectral analysis, local field potential recordings, | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0202-21.2021 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/ghostipy/ | SCR_026231 | 2026-07-27 09:37:35 | 0 | ||||||||
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SaLSa Resource Report Resource Website |
SaLSa (RRID:SCR_026182) | source code, software resource, software toolkit | Software MATLAB package for analyzing and categorizing behaviors using pose estimation data. Integrates semi-automatic labeling with machine learning, specifically Long Short-Term Memory neural networks, to classify behavioral "syllables” (distinct, repeatable behaviors). Combinatory approach of semi-automatic labeling and long short-term memory to classify behavioral syllables. | OpenBehavior, semi-automatic labeling, long short-term memory, classify behavioral syllables, behavior, pose estimation data, | is listed by: OpenBehavior | PMID:37989587 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/salsa/ | SCR_026182 | 2026-07-27 09:37:34 | 0 | ||||||||
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ArUco Resource Report Resource Website 10+ mentions |
ArUco (RRID:SCR_026572) | source code, software resource, instrument resource | Automated rodent behavioral scoring system, complete with 3D design files and code/software. System monitors behavioral engagement using open-source software. 3D design files and necessary software has been made available, as well as code that can be used for data analysis. | OpenBehavior, Aruco marker based tracking, pose estimation, rodent behavioral session, | is listed by: OpenBehavior | NINDS R01NS110823; United States (US) Department of Veterans Affairs Rehabilitation Research and Development Service ; University of Texas at Dallas |
DOI:10.1523/ENEURO.0500-23.2024 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/aruco-markers/ | SCR_026572 | Augmented Reality University of Cordoba, Aruco | 2026-07-27 09:37:40 | 14 | ||||||
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Active Commutator Resource Report Resource Website |
Active Commutator (RRID:SCR_027098) | source code, software resource, instrument resource | Open source active commutator for Open Ephys / Intan electrophysiology systems. Motorized device used in neuroscience research, particularly in studies involving freely moving animals, to manage wires or fibers connecting headstage or other device to external equipment. Addresses common issue of tether tangling during experiments with freely moving subjects. Relies on Hall-Effect sensor detecting rotation of cable, this information is continuously fed to Adafruit microcontroller that operates servo motor to counter-rotate cable as needed, preventing twisting and ensuring clear, uninterrupted data collection. System can also be paused, restarted, and its neutral position recalibrated with simple button presses, allowing for flexible operation. | OpenBehavior, device, commutator, neuroscience, electrophysiology system, freely moving subjects, flexible operation, | is listed by: OpenBehavior | Free, Available for download, Freely available | SCR_027098 | 2026-07-27 09:37:47 | 0 | ||||||||||
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Low Cost Open Source Eye Tracking Resource Report Resource Website |
Low Cost Open Source Eye Tracking (RRID:SCR_021497) | software resource | Software tool as part of system designed to be easy to build and setup for real time eye tracking.Open source software provides accurate eye tracking. Can identify shapes such as circles, lines, and triangles.You can rotate and mirror images and also use variety of filters.Capable of processing video in real-time for optical flow. App for viewing multiple video streams from USB cameras. | Real time eye tracking, identify shapes, identify circles, identify lines, identify triangles, fixed point laser beacons, camera, processing video in real time, OpenBehavior |
is listed by: OpenBehavior is related to: Low Cost Open Source Eye Tracking project |
Free, Freely available | https://edspace.american.edu/openbehavior/project/low-cost-eye-tracking/ | SCR_021497 | CameraMultiViewer | 2026-07-25 12:09:47 | 0 | ||||||||
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openEyeTrack Resource Report Resource Website 1+ mentions |
openEyeTrack (RRID:SCR_021401) | software resource | Open source software tool used as part of multithreaded eye tracker.Video based eye tracker. | Multithreaded eye tracker, tracking eye position system, head fixed application, OpenBehavior |
is listed by: OpenBehavior is related to: openEyeTrack project |
DOI:10.21105/joss.01631 | Free, Freely available | https://edspace.american.edu/openbehavior/project/openeyetrack/ | SCR_021401 | 2026-07-25 12:09:46 | 1 | ||||||||
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NINscope software Resource Report Resource Website |
NINscope software (RRID:SCR_021583) | software resource | Sofware tool for use with NINscope. | Software resource, OpenBehavior |
is listed by: OpenBehavior is related to: NINscope |
DOI:10.7554/elife.49987 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/ninscope/ | SCR_021583 | 2026-07-25 12:09:48 | 0 | ||||||||
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OpenMV Resource Report Resource Website |
OpenMV (RRID:SCR_021615) | software resource | Software tool as part of OpenMV system. | OpenMV system, OpenBehavior |
is listed by: OpenBehavior is related to: OpenMV project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/openmv/ | SCR_021615 | 2026-07-25 12:09:48 | 0 | |||||||||
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pyControl Resource Report Resource Website 1+ mentions |
pyControl (RRID:SCR_021612) | software resource | Open source software Python tool for behavioural experiment control. Part of pyControl system. | Software resource, OpenBehavior |
is listed by: OpenBehavior is related to: pyControl project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/pycontrol/ | SCR_021612 | 2026-07-25 12:09:49 | 7 | |||||||||
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Open Ephys Resource Report Resource Website 1+ mentions |
Open Ephys (RRID:SCR_021624) | nonprofit organization | Organization mission is to advance understanding of brain by promoting community ownership of neuroscience tools.Collaborative effort to develop, document, and distribute open source tools for systems neuroscience.Project aims to distribute reliable open source software as well as tools for extracellular recording and stimulation. | develop open source tools, distribute open source tools, neuroscience tools, OpenBehavior | is listed by: OpenBehavior | DOI:10.1088/1741-2552/aa651f | SCR_021624 | Open Ephys | 2026-07-25 12:09:48 | 6 | |||||||||
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tmilltracker Resource Report Resource Website |
tmilltracker (RRID:SCR_023511) | software resource | Open source computer vision controlled treadmill system for small running animals such as insects and mice. Treadmill is controlled by Python software, allowing for flexible control of video tracking parameters, behavioral triggers, distance ran, and feedback. Used for studying locomotor behavior. | OpenBehavior, treadmill system, running animals, locomotor behavior, video tracking parameters, behavioral triggers, distance ran, | is listed by: OpenBehavior | Royal Society Research ; Nuffield Foundation Science Bursary Programme ; BBSRC Research Experience Placement |
DOI:10.1016/j.jneumeth.2013.03.009 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/tmilltracker/ | SCR_023511 | 2026-07-25 12:10:31 | 0 | |||||||
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Automated 2 Photon Imaging Compatible Platform for Assessing Working Memory Resource Report Resource Website |
Automated 2 Photon Imaging Compatible Platform for Assessing Working Memory (RRID:SCR_023463) | instrument resource | Open source automated platform for assessing working memory and prefrontal circuit function. Designed for automated, high-throughput assessments of working memory and simultaneous two-photon imaging in chronic stress studies. Physiology compatible behavioral platform designed specifically for studying circuit mechanisms underlying working memory and related cognitive functions in chronic stress states. | OpenBehavior, instrument, assessing working memory, prefrontal circuit function, chronic stress, behavioral platform, | is listed by: OpenBehavior | DOI:10.1016/j.ynstr.2023.100518 | SCR_023463 | Automated 2-Photon Imaging-Compatible Platform for Assessing Working Memory | 2026-07-25 12:10:29 | 0 |
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