URL: https://github.com/davidemms/OrthoFinder
Proper Citation: OrthoFinder (RRID:SCR_017118)
Description: Software Python application for comparative genomics analysis. Finds orthogroups and orthologs, infers rooted gene trees for all orthogroups and identifies all of gene duplcation events in those gene trees, infers rooted species tree for species being analysed and maps gene duplication events from gene trees to branches in species tree, improves orthogroup inference accuracy. Runs set of protein sequence files, one per species, in FASTA format.
Synonyms: OrthoFinder2, OrthoFinder
Resource Type: data analysis software, data processing software, software application, software resource
Defining Citation: PMID:26243257, DOI:10.1101/466201
Keywords: comparative, genomic, analysis, find, orthogroup, ortholog, infer, gene, tree, duplicate, accuracy, protein, sequence, bio.tools
Funding: Bill and Melinda Gates Foundation ; UKAID
Availability: Free, Available for download, Freely available
Resource Name: OrthoFinder
Resource ID: SCR_017118
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