Resource Name

3D Slicer

RRID:SCR_005619 RRID Copied

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3D Slicer (RRID:SCR_005619)

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Resource Information

URL: http://slicer.org/

Proper Citation: 3D Slicer (RRID:SCR_005619)

Description: A free, open source software package for visualization and image analysis including registration, segmentation, and quantification of medical image data. Slicer provides a graphical user interface to a powerful set of tools so they can be used by end-user clinicians and researchers alike. 3D Slicer is natively designed to be available on multiple platforms, including Windows, Linux and Mac Os X. Slicer is based on VTK (http://public.kitware.com/vtk) and has a modular architecture for easy addition of new functionality. It uses an XML-based file format called MRML - Medical Reality Markup Language which can be used as an interchange format among medical imaging applications. Slicer is primarily written in C++ and Tcl.

Abbreviations: Slicer

Synonyms: Slicer, 3D Slicer: A multi-platform free and open source software package for visualization and medical image computing, 3D Slicer, 3DSlicer

Resource Type: data processing software, software application, image analysis software, software resource, data visualization software

Keywords: birn, diffusion, functional, na-mic (ncbc), nifti-1 support, registration, segmentation, visualization, volume, warping

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Funding Agency: NIH, NCRR, NIBIB, NCI, US Army, Telemedicine and Advanced Technology Research Center

Availability: 3D Slicer License

Resource Name: 3D Slicer

Resource ID: SCR_005619

Alternate IDs: nif-0000-00256

Alternate URLs: http://www.nitrc.org/projects/slicer

This resource

uses	3DSlicerLupusLesionModule
uses	ShapePopulationViewer
uses	Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI
uses	Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI
is listed by	NeuroImaging Tools and Resources Collaboratory (NITRC)
is listed by	Biositemaps
is related to	Slicer3 Example Modules
is related to	Stereoscopic Atlas of Intrinsic Brain Networks
is related to	VMTK in 3D Slicer
is related to	Diffusion Tractography with Kalman Filter
is related to	Fast Nonlocal Means for MRI denoising
is related to	SpineSegmentation module for 3DSlicer
is related to	BioImage Suite
is related to	NA-MIC Kit
is related to	Hammer And WML Modules for 3D Slicer
is related to	ABC (Atlas Based Classification)
is related to	ARCTIC
is related to	Finsler tractography module for Slicer
is related to	GAMBIT
is related to	GPU based affine registration
is related to	GTRACT
is related to	LEAD-DBS
has parent organization	Harvard University; Cambridge; United States
is parent organization of	Level-set Segmentation for Slicer3
is parent organization of	Slicer3 Module Rician noise filter
has plug in	MultiXplore
works with	UManitoba - JHU Functionally Defined Human White Matter Atlas
works with	SlicerMorph

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