URL: http://r3cseq.genereg.net/Site/index.html
Proper Citation: r3Cseq (RRID:SCR_003198)
Description: An R/Bioconductor package to identify chromosomal interaction regions generated by chromosome conformation capture (3C) coupled to next-generation sequencing (NGS), a technique termed 3C-seq. It performs data analysis for a number of different experimental designs, as it can analyze 3C-seq data with or without a control experiment and it can be used to facilitate data analysis for experiments with multiple replicates. The r3Cseq package provides functions to perform data normalization, statistical analysis for cis/trans interactions and visualization in order to help scientists identify genomic regions that physically interact with the given viewpoints of interest. This tool greatly facilitates hypothesis generation and the interpretation of experimental results.
Abbreviations: r3Cseq
Resource Type: data analysis software, software resource, data processing software, software application
Defining Citation: PMID:23671339
Keywords: next-generation sequencing, genomic, interaction, chromosome conformation capture, chromosome, 3c-seq, r
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