URL: http://www.bioconductor.org/packages/release/bioc/html/genoset.html
Proper Citation: GenoSet (RRID:SCR_001275)
Description: Software package to load, manipulate, and plot copynumber and BAF data by providing classes similar to ExpressionSet for copy number analysis. The class extends ExpressionSet by adding a locData slot for a RangedData or GRanegs object. This object contains feature genome location data and provides for efficient subsetting on genome location. CNSet and BAFSet extend GenoSet and require assayData matrices for Copy Number (cn) or Log-R Ratio (lrr) and B-Allele Frequency (baf) data. Implements and provides convenience functions for processing of copy number and B-Allele Frequency data.
Abbreviations: GenoSet
Synonyms: genoset - Provides classes similar to ExpressionSet for copy number analysis
Resource Type: data analysis software, software resource, data processing software, software application
Keywords: copy number variation, data representation, infrastructure, microarray, snp
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