URL: https://github.com/broadinstitute/pilon/
Proper Citation: Pilon (RRID:SCR_014731)
Description: Software tool to automatically improve draft assemblies and find variation among strains, including large event detection. FASTA files of genome along with one or more BAM files of reads aligned as input. Read alignment analysis is used to identify inconsistencies between input genome and evidence in reads, then attempts to make improvements to genome.
Resource Type: software resource, sequence analysis software, data processing software, software application, data analysis software
Defining Citation: DOI:10.1371/journal.pone.0112963, DOI:10.1371/journal.pone.0112963
Keywords: automatically, improve, draft, assembly, variation, strain, genome, read, alignment, analysis, inconsistency, bio.tools
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