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Pubmed ID: 32550484
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A Perl/C++ software package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. BreakDancerMax predicts five types of structural variants: insertions, deletions, inversions, inter- and intra-chromosomal translocations from next-generation short paired-end sequencing reads using read pairs that are mapped with unexpected separation distances or orientation. (entry from Genetic Analysis Software)
View all literature mentionsOriginal SAMTOOLS package has been split into three separate repositories including Samtools, BCFtools and HTSlib. Samtools for manipulating next generation sequencing data used for reading, writing, editing, indexing,viewing nucleotide alignments in SAM,BAM,CRAM format. BCFtools used for reading, writing BCF2,VCF, gVCF files and calling, filtering, summarising SNP and short indel sequence variants. HTSlib used for reading, writing high throughput sequencing data.
View all literature mentionsDatabase of Drosophila genetic and genomic information with information about stock collections and fly genetic tools. Gene Ontology (GO) terms are used to describe three attributes of wild-type gene products: their molecular function, the biological processes in which they play a role, and their subcellular location. Additionally, FlyBase accepts data submissions. FlyBase can be searched for genes, alleles, aberrations and other genetic objects, phenotypes, sequences, stocks, images and movies, controlled terms, and Drosophila researchers using the tools available from the "Tools" drop-down menu in the Navigation bar.
View all literature mentionsGraph-based alignment of next generation sequencing reads to a population of genomes.
View all literature mentionsCollects, maintains and distributes Drosophila melanogaster strains for research. Emphasis is placed on genetic tools that are useful to a broad range of investigations. These include basic stocks of flies used in genetic analysis such as marker, balancer, mapping, and transposon-tagging strains; mutant alleles of identified genes, including a large set of transposable element insertion alleles; defined sets of deficiencies and a variety of other chromosomal aberrations; engineered lines for somatic and germline clonal analysis; GAL4 and UAS lines for targeted gene expression; enhancer trap and lacZ-reporter strains with defined expression patterns for marking tissues; and a collection of transposon-induced lethal mutations.
View all literature mentionsDrosophila melanogaster with name Df(1)BSC286, w[1118]/FM7h/Dp(2;Y)G, P{w[+mC]=hs-hid}Y from BDSC.
View all literature mentionsDrosophila melanogaster with name Df(1)BSC297, w[1118]/Binsinscy from BDSC.
View all literature mentionsDrosophila melanogaster with name Df(1)Exel6240, w[1118] P{w[+mC]=XP-U}Exel6240/FM7c from BDSC.
View all literature mentionsDrosophila melanogaster with name Df(1)e02477-d06059, w[1118] from BDSC.
View all literature mentionsDrosophila melanogaster with name Df(1)BSC285, w[1118]/Binsinscy from BDSC.
View all literature mentionsDrosophila melanogaster with name w[1118]; Dp(1;3)DC486, PBac{y[+mDint2] w[+mC]=DC486}VK00033/TM6C, Sb[1] from BDSC.
View all literature mentionsDrosophila melanogaster with name w[1118]; Dp(1;3)DC159, PBac{y[+mDint2] w[+mC]=DC159}VK00033 from BDSC.
View all literature mentionsDrosophila melanogaster with name Df(1)BSC351, w[1118]/FM7h/Dp(2;Y)G, P{w[+mC]=hs-hid}Y from BDSC.
View all literature mentionsDrosophila melanogaster with name Df(1)ED6802, w[1118] P{w[+mW.Scer\FRT.hs3]=3'.RS5+3.3'}ED6802/FM7h from BDSC.
View all literature mentionsDrosophila melanogaster with name Df(1)BSC882, w[1118] P+PBac{w[+mC]=XP3.WH3}BSC882/FM7h/Dp(2;Y)G, P{w[+mC]=hs-hid}Y from BDSC.
View all literature mentionsDrosophila melanogaster with name w[1118]; Dp(1;3)DC026, PBac{y[+mDint2] w[+mC]=DC026}VK00033 from BDSC.
View all literature mentionsDrosophila melanogaster with name Df(1)BSC654, w[1118]/FM7h/Dp(2;Y)G, P{w[+mC]=hs-hid}Y from BDSC.
View all literature mentionsDrosophila melanogaster with name Df(1)Exel6239, w[1118] P{w[+mC]=XP-U}Exel6239/FM7c from BDSC.
View all literature mentionsDrosophila melanogaster with name w[1118]; Dp(1;3)DC163, PBac{y[+mDint2] w[+mC]=DC163}VK00033 from BDSC.
View all literature mentionsDrosophila melanogaster with name Df(1)Exel6238, w[1118] P{w[+mC]=XP-U}Exel6238/FM7c from BDSC.
View all literature mentionsDrosophila melanogaster with name y[1] pn[1] w[1] Sxl[M8]/Df(1)Sxl[fP7B0], y[1] pn[1] w[1] Sxl[fP7B0] from BDSC.
View all literature mentionsDrosophila melanogaster with name y[1] cv[1] sov[2] v[1] f[1]/FM0 from BDSC.
View all literature mentionsDrosophila melanogaster with name Df(1)dx81, w[*]/Dp(1;Y)dx[+]1/C(1)M5 from BDSC.
View all literature mentionsDrosophila melanogaster with name w[1118]; Dp(1;3)DC158, PBac{y[+mDint2] w[+mC]=DC158}VK00033/TM6C, Sb[1] from BDSC.
View all literature mentionsDrosophila melanogaster with name w[1118]; Dp(1;3)DC164, PBac{y[+mDint2] w[+mC]=DC164}VK00033 from BDSC.
View all literature mentionsDrosophila melanogaster with name sov[A1304-1] g[1] f[1]/FM7c from BDSC.
View all literature mentionsDrosophila melanogaster with name Df(1)BSC276, w[1118]/FM7h/Dp(2;Y)G, P{w[+mC]=hs-hid}Y from BDSC.
View all literature mentionsDrosophila melanogaster with name Df(1)Sxl-bt, y[1]/Binsinscy from BDSC.
View all literature mentionsDrosophila melanogaster with name Df(1)BSC640, w[1118]/Binsinscy from BDSC.
View all literature mentionsDrosophila melanogaster with name w[1118] sov[ML150]/FM0 from BDSC.
View all literature mentionsDrosophila melanogaster with name Df(1)ED6829, w[1118] P{w[+mW.Scer\FRT.hs3]=3'.RS5+3.3'}ED6829/FM7h from BDSC.
View all literature mentionsDrosophila melanogaster with name Df(1)BSC535, w[1118]/FM7h/Dp(2;Y)G, P{w[+mC]=hs-hid}Y from BDSC.
View all literature mentionsDrosophila melanogaster with name w[1118]; Dp(1;3)DC160, PBac{y[+mDint2] w[+mC]=DC160}VK00033/TM6C, Sb[1] from BDSC.
View all literature mentionsDrosophila melanogaster with name Df(1)ED6878, P{w[+mW.Scer\FRT.hs3]=3'.RS5+3.3'}ED6878/FM7h from BDSC.
View all literature mentionsDrosophila melanogaster with name Df(1)ED418, w[1118] P{w[+mW.Scer\FRT.hs3]=3'.RS5+3.3'}ED418/FM7j, Bar[1] from BDSC.
View all literature mentions