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Rapid single-wavelength lightsheet localization microscopy for clarified tissue.

Li-An Chu | Chieh-Han Lu | Shun-Min Yang | Yen-Ting Liu | Kuan-Lin Feng | Yun-Chi Tsai | Wei-Kun Chang | Wen-Cheng Wang | Shu-Wei Chang | Peilin Chen | Ting-Kuo Lee | Yeu-Kuang Hwu | Ann-Shyn Chiang | Bi-Chang Chen
Nature communications | 2019

Optical super-resolution microscopy allows nanoscale imaging of protein molecules in intact biological tissues. However, it is still challenging to perform large volume super-resolution imaging for entire animal organs. Here we develop a single-wavelength Bessel lightsheet method, optimized for refractive-index matching with clarified specimens to overcome the aberrations encountered in imaging thick tissues. Using spontaneous blinking fluorophores to label proteins of interest, we resolve the morphology of most, if not all, dopaminergic neurons in the whole adult brain (3.64 × 107 µm3) of Drosophila melanogaster at the nanometer scale with high imaging speed (436 µm3 per second) for localization. Quantitative single-molecule localization reveals the subcellular distribution of a monoamine transporter protein in the axons of a single, identified serotonergic Dorsal Paired Medial (DPM) neuron. Large datasets are obtained from imaging one brain per day to provide a robust statistical analysis of these imaging data.

Pubmed ID: 31628310

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Drosophila Genomics Resource Center (tool)

RRID:SCR_002845

Serves Drosophila research community by collecting and distributing DNA clones and vectors; collecting and distributing Drosophila cell lines; developing and testing genomics technologies for use in Drosophila and assisting members of the research community in their use.

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Imaris (tool)

RRID:SCR_007370

Imaris provides range of capabilities for working with three dimensional images. Uses flexible editing and processing functions, such as interactive surface rendering and object slicing capabilities. And output to standard TIFF, Quicktime and AVI formats. Imaris accepts virtually all image formats that are used in confocal microscopy and many of those used in wide-field image acquisition.

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Thermo Fisher Scientific (tool)

RRID:SCR_008452

Commercial vendor and service provider of laboratory reagents and antibodies. Supplier of scientific instrumentation, reagents and consumables, and software services.

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Sigma-Aldrich (tool)

RRID:SCR_008988

American chemical, life science and biotechnology company owned by Merck KGaA. Merger of Sigma Chemical Company and Aldrich Chemical Company. Provides organic and inorganic chemicals, building blocks, reagents, advanced materials and stable isotopes for chemical synthesis, medicinal chemistry and materials science, antibiotics, buffers, carbohydrates, enzymes, forensic tools, hematology and histology, nucleotides, proteins, peptides, amino acids and their derivatives.

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y[1] w[1]; P{w[+mW.hs]=GawB}Mz19 (organism)

RRID:BDSC_34497

Drosophila melanogaster with name y[1] w[1]; P{w[+mW.hs]=GawB}Mz19 from BDSC.

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w[*]; TI{GAL4}fru[GAL4.P1.D]/TM3, Sb[1] (organism)

RRID:BDSC_66696

Drosophila melanogaster with name w[*]; TI{GAL4}fru[GAL4.P1.D]/TM3, Sb[1] from BDSC.

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y[1] w[*]; P{w[+mC]=UAS-mCD8::GFP.L}LL5, P{UAS-mCD8::GFP.L}2 (organism)

RRID:BDSC_5137

Drosophila melanogaster with name y[1] w[*]; P{w[+mC]=UAS-mCD8::GFP.L}LL5, P{UAS-mCD8::GFP.L}2 from BDSC.

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w[1118]; P{y[+t7.7] w[+mC]=20XUAS-IVS-GCaMP6f}attP40 (organism)

RRID:BDSC_42747

Drosophila melanogaster with name w[1118]; P{y[+t7.7] w[+mC]=20XUAS-IVS-GCaMP6f}attP40 from BDSC.

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Bloomington Drosophila Stock Center (biomaterial supply resource)

RRID:SCR_006457

Collects, maintains and distributes Drosophila melanogaster strains for research. Emphasis is placed on genetic tools that are useful to a broad range of investigations. These include basic stocks of flies used in genetic analysis such as marker, balancer, mapping, and transposon-tagging strains; mutant alleles of identified genes, including a large set of transposable element insertion alleles; defined sets of deficiencies and a variety of other chromosomal aberrations; engineered lines for somatic and germline clonal analysis; GAL4 and UAS lines for targeted gene expression; enhancer trap and lacZ-reporter strains with defined expression patterns for marking tissues; and a collection of transposon-induced lethal mutations.

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