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Development of genomic simple sequence repeat markers for Glycyrrhiza lepidota and cross-amplification of other Glycyrrhiza species.

Jun Hyoung Bang | Chi Eun Hong | Sebastin Raveendar | Kyong Hwan Bang | Kyung Ho Ma | Soon Wook Kwon | Hojin Ryu | Ick Hyun Jo | Jong-Wook Chung
PeerJ | 2019

Licorice (Glycyrrhiza spp. L.) is used as a natural sweetener and medicinal herb in European and Asian countries. Molecular studies have been conducted to find differences between wild and cultivated species because most wild species are highly resistant to abiotic and biotic stresses compared with their cultivated species. However, few molecular markers have been developed for studying the genetic diversity and population structure of licorice species and to identify differences between cultivars. Thus, the present study aimed to develop a set of genomic simple sequence repeat (SSR) markers for molecular studies of these species.

Pubmed ID: 31410317

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This is a list of tools and resources that we have found mentioned in this publication.


POWERMARKER (tool)

RRID:SCR_009332

A comprehensive set of statistical methods for genetic marker data analysis, designed especially for SSR/SNP data analysis. PowerMarker builds a powerful user interface around both new and traditional statistical methods for population genetic analysis. See analysis to check out the versatility of PowerMarker. PowerMarker is also a 2D Viewer - which was used intensively for visualizing linkage disequilibria results. (entry from Genetic Analysis Software)

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MISA (tool)

RRID:SCR_010765

Software tool that allows the identification and localization of perfect microsatellites as well as compound microsatellites which are interrupted by a certain number of bases.

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