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Targeted deep sequencing from multiple sources demonstrates increased NOTCH1 alterations in lung cancer patient plasma.

Yuwei Liao | Zhaokui Ma | Yu Zhang | Dan Li | Dekang Lv | Zhisheng Chen | Peiying Li | Aisha Ai-Dherasi | Feng Zheng | Jichao Tian | Kun Zou | Yue Wang | Dongxia Wang | Miguel Cordova | Huan Zhou | Xiuhua Li | Dan Liu | Ruofei Yu | Qingzheng Zhang | Xiaolong Zhang | Jian Zhang | Xuehong Zhang | Xia Zhang | Yulong Li | Yanyan Shao | Luyao Song | Ruimei Liu | Yichen Wang | Sufiyan Sufiyan | Quentin Liu | Gareth I Owen | Zhiguang Li | Jun Chen
Cancer medicine | 2019

Targeted therapies are based on specific gene alterations. Various specimen types have been used to determine gene alterations, however, no systemic comparisons have yet been made. Herein, we assessed alterations in selected cancer-associated genes across varying sample sites in lung cancer patients.

Pubmed ID: 31369215

Research resources used in this publication

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Antibodies used in this publication

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Associated grants

  • Agency: IMII, International
    Id: P09/016-F (GIO)
  • Agency: CONICYT-FONDAP, International
    Id: 15130011
  • Agency: National Natural Science Foundation of China, International
    Id: 81472637
  • Agency: National Natural Science Foundation of China, International
    Id: 81602200
  • Agency: National Natural Science Foundation of China, International
    Id: 81672784
  • Agency: Pandeng Scholar Program from the Department of Education of Liaoning Province, International
    Id: 1180241

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This is a list of tools and resources that we have found mentioned in this publication.


QIAGEN (tool)

RRID:SCR_008539

A commercial organization which provides assay technologies to isolate DNA, RNA, and proteins from any biological sample. Assay technologies are then used to make specific target biomolecules, such as the DNA of a specific virus, visible for subsequent analysis.

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ANNOVAR (tool)

RRID:SCR_012821

An efficient software tool to utilize update-to-date information to functionally annotate genetic variants detected from diverse genomes (including human genome hg18, hg19, as well as mouse, worm, fly, yeast and many others). Given a list of variants with chromosome, start position, end position, reference nucleotide and observed nucleotides, ANNOVAR can perform: 1. gene-based annotation. 2. region-based annotation. 3. filter-based annotation. 4. other functionalities. (entry from Genetic Analysis Software)

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