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Evidence for DNA methylation mediating genetic liability to non-syndromic cleft lip/palate.

Laurence J Howe | Tom G Richardson | Ryan Arathimos | Lucas Alvizi | Maria R Passos-Bueno | Philip Stanier | Ellen Nohr | Kerstin U Ludwig | Elisabeth Mangold | Michael Knapp | Evie Stergiakouli | Beate St Pourcain | George Davey Smith | Jonathan Sandy | Caroline L Relton | Sarah J Lewis | Gibran Hemani | Gemma C Sharp
Epigenomics | 2019

To determine if nonsyndromic cleft lip with or without cleft palate (nsCL/P) genetic risk variants influence liability to nsCL/P through gene regulation pathways, such as those involving DNA methylation.

Pubmed ID: 30638414

Research resources used in this publication

None found

Additional research tools detected in this publication

Antibodies used in this publication

None found

Associated grants

  • Agency: Medical Research Council, United Kingdom
    Id: MC_PC_19009
  • Agency: Medical Research Council, United Kingdom
    Id: MC_UU_12013/1
  • Agency: Medical Research Council, United Kingdom
    Id: MC_UU_00011/1
  • Agency: Medical Research Council, United Kingdom
    Id: MC_UU_12013/5
  • Agency: Wellcome Trust, United Kingdom
  • Agency: Medical Research Council, United Kingdom
    Id: MC_UU_12013/2
  • Agency: Medical Research Council, United Kingdom
    Id: MC_UU_00011/5
  • Agency: Medical Research Council, United Kingdom
    Id: MR/S003886/1
  • Agency: Medical Research Council, United Kingdom
    Id: MC_PC_15018
  • Agency: Medical Research Council, United Kingdom
    Id: MC_UU_12013/8
  • Agency: Medical Research Council, United Kingdom
    Id: G9815508

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This is a list of tools and resources that we have found mentioned in this publication.


PLINK (tool)

RRID:SCR_001757

Open source whole genome association analysis toolset, designed to perform range of basic, large scale analyses in computationally efficient manner. Used for analysis of genotype/phenotype data. Through integration with gPLINK and Haploview, there is some support for subsequent visualization, annotation and storage of results. PLINK 1.9 is improved and second generation of the software.

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METAL (tool)

RRID:SCR_002013

Software application designed to facilitate meta-analysis of large datasets (such as several whole genome scans) in a convenient, rapid and memory efficient manner. (entry from Genetic Analysis Software)

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ALSPAC (tool)

RRID:SCR_007260

A long-term health research project which follows pregnant women and their offspring in a continuous health and developmental study. More than 14,000 mothers enrolled during pregnancy in 1991 and 1992, and the health and development of their children has been followed in great detail. The ALSPAC families have provided a vast amount of genetic and environmental information over the years which can be made available to researchers globally.

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