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NBCe1 Na+-HCO3- cotransporter ablation causes reduced apoptosis following cardiac ischemia-reperfusion injury in vivo.

Kanimozhi Vairamani | Vikram Prasad | Yigang Wang | Wei Huang | Yinhua Chen | Mario Medvedovic | John N Lorenz | Gary E Shull
World journal of cardiology | 2018

To investigate the hypothesis that cardiomyocyte-specific loss of the electrogenic NBCe1 Na+-HCO3 - cotransporter is cardioprotective during in vivo ischemia-reperfusion (IR) injury.

Pubmed ID: 30344957

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Associated grants

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This is a list of tools and resources that we have found mentioned in this publication.


GOrilla: Gene Ontology Enrichment Analysis and Visualization Tool (tool)

RRID:SCR_006848

A tool for identifying and visualizing enriched GO terms in ranked lists of genes. It can be run in one of two modes: * Searching for enriched GO terms that appear densely at the top of a ranked list of genes or * Searching for enriched GO terms in a target list of genes compared to a background list of genes.

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Bioconductor (tool)

RRID:SCR_006442

Software repository for R packages related to analysis and comprehension of high throughput genomic data. Uses separate set of commands for installation of packages. Software project based on R programming language that provides tools for analysis and comprehension of high throughput genomic data.

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TopHat (tool)

RRID:SCR_013035

Software tool for fast and high throughput alignment of shotgun cDNA sequencing reads generated by transcriptomics technologies. Fast splice junction mapper for RNA-Seq reads. Aligns RNA-Seq reads to mammalian-sized genomes using ultra high-throughput short read aligner Bowtie, and then analyzes mapping results to identify splice junctions between exons.TopHat2 is accurate alignment of transcriptomes in presence of insertions, deletions and gene fusions.

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C57BL/6J (tool)

RRID:IMSR_JAX:000664

Mus musculus with name C57BL/6J from IMSR.

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129/SvJ (tool)

RRID:MGI:5659152

laboratory mouse with name 129/SvJ from MGI.

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