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Impact of Next-generation Sequencing Defined Human Immunodeficiency Virus Pretreatment Drug Resistance on Virological Outcomes in the ANRS 12249 Treatment-as-Prevention Trial.

Anne Derache | Collins C Iwuji | Kathy Baisley | Siva Danaviah | Anne-Geneviève Marcelin | Vincent Calvez | Tulio de Oliveira | François Dabis | Kholoud Porter | Deenan Pillay
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America | 2019

Previous studies in human immunodeficiency virus (HIV)-positive individuals on thymidine analogue backbone antiretroviral therapy (ART) with either nevirapine or efavirenz have suggested poorer virological outcomes in the presence of pretreatment drug resistance (PDR). We assessed the impact of PDR on virological suppression (VS; <50 copies/mL) in individuals prescribed primarily tenofovir/emtricitabine/efavirenz in rural KwaZulu-Natal within a treatment-as-prevention trial.

Pubmed ID: 30321314

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Associated grants

  • Agency: Medical Research Council, United Kingdom
    Id: MR/K012126/1
  • Agency: Wellcome Trust, United Kingdom

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Geneious (tool)

RRID:SCR_010519

Software package for sequence alignment, assembly and analysis. Integrated and extendable desktop software platform for organization and analysis of sequence data. Bioinformatics software platform packed with molecular biology and sequence analysis tools.

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BaseSpace (tool)

RRID:SCR_011881

Cloud platform to be directly integrated in to the industry?s leading sequencing platforms, with no cumbersome and time consuming data transfer steps.

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