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Signaling network prediction by the Ontology Fingerprint enhanced Bayesian network.

Tingting Qin | Lam C Tsoi | Kellie J Sims | Xinghua Lu | W Jim Zheng
BMC systems biology | 2012

Despite large amounts of available genomic and proteomic data, predicting the structure and response of signaling networks is still a significant challenge. While statistical method such as Bayesian network has been explored to meet this challenge, employing existing biological knowledge for network prediction is difficult. The objective of this study is to develop a novel approach that integrates prior biological knowledge in the form of the Ontology Fingerprint to infer cell-type-specific signaling networks via data-driven Bayesian network learning; and to further use the trained model to predict cellular responses.

Pubmed ID: 23282239

Research resources used in this publication

None found

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Antibodies used in this publication

None found

Associated grants

  • Agency: NCRR NIH HHS, United States
    Id: 5P20RR017677-10
  • Agency: NLM NIH HHS, United States
    Id: R01 LM010144
  • Agency: NLM NIH HHS, United States
    Id: 5-T15-LM007438-02
  • Agency: NCRR NIH HHS, United States
    Id: 5P20RR017696-05
  • Agency: NLM NIH HHS, United States
    Id: 5R01LM009153
  • Agency: NIGMS NIH HHS, United States
    Id: 5K12GM081265-03
  • Agency: NIGMS NIH HHS, United States
    Id: T32GM074934 07
  • Agency: NLM NIH HHS, United States
    Id: 5R01LM010144
  • Agency: NCRR NIH HHS, United States
    Id: P20 RR017677-10
  • Agency: NCRR NIH HHS, United States
    Id: 1 UL1 RR029882-01
  • Agency: NIGMS NIH HHS, United States
    Id: R01GM063265-09S1
  • Agency: NLM NIH HHS, United States
    Id: R01 LM011155
  • Agency: NCRR NIH HHS, United States
    Id: UL1 RR029882

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This is a list of tools and resources that we have found mentioned in this publication.


Hep-G2 (tool)

RRID:CVCL_0027

Cell line Hep-G2 is a Cancer cell line with a species of origin Homo sapiens (Human)

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