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High diversity at PRDM9 in chimpanzees and bonobos.

Linn Fenna Groeneveld | Rebeca Atencia | Rosa M Garriga | Linda Vigilant
PloS one | 2012

The PRDM9 locus in mammals has increasingly attracted research attention due to its role in mediating chromosomal recombination and possible involvement in hybrid sterility and hence speciation processes. The aim of this study was to characterize sequence variation at the PRDM9 locus in a sample of our closest living relatives, the chimpanzees and bonobos.

Pubmed ID: 22768294

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FigTree (tool)

RRID:SCR_008515

A graphical viewer of phylogenetic trees and a program for producing publication-ready figures. It is designed to display summarized and annotated trees produced by BEAST.

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PAML (tool)

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Package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. PAML estimates parameters and tests hypotheses to study the evolutionary process from a phylogenetic tree.

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SeaView (tool)

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Graphical user interface for multiple sequence alignment and molecular phylogeny. SeaView also generates phylogenetic trees.

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GARLI (tool)

RRID:SCR_016117

Software application for inferring phylogenetic trees and analysis of molecular sequence data using the maximum-likelihood criterion. It implements nucleotide, amino acid and codon-based models of sequence evolution.

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