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Biophysical basis of the binding of WWOX tumor suppressor to WBP1 and WBP2 adaptors.

Caleb B McDonald | Laura Buffa | Tomer Bar-Mag | Zaidoun Salah | Vikas Bhat | David C Mikles | Brian J Deegan | Kenneth L Seldeen | Arun Malhotra | Marius Sudol | Rami I Aqeilan | Zafar Nawaz | Amjad Farooq
Journal of molecular biology | 2012

The WW-containing oxidoreductase (WWOX) tumor suppressor participates in a diverse array of cellular activities by virtue of its ability to recognize WW-binding protein 1 (WBP1) and WW-binding protein 2 (WBP2) signaling adaptors among a wide variety of other ligands. Herein, using a multitude of biophysical techniques, we provide evidence that while the WW1 domain of WWOX binds to PPXY motifs within WBP1 and WBP2 in a physiologically relevant manner, the WW2 domain exhibits no affinity toward any of these PPXY motifs. Importantly, our data suggest that while R25/W44 residues located within the binding pocket of a triple-stranded β-fold of WW1 domain are critical for the recognition of PPXY ligands, they are replaced by the chemically distinct E66/Y85 duo at structurally equivalent positions within the WW2 domain, thereby accounting for its failure to bind PPXY ligands. Predictably, not only does the introduction of E66R/Y85W double substitution within the WW2 domain result in gain of function but the resulting engineered domain, hereinafter referred to as WW2_RW, also appears to be a much stronger binding partner of WBP1 and WBP2 than the wild-type WW1 domain. We also show that while the WW1 domain is structurally disordered and folds upon ligand binding, the WW2 domain not only adopts a fully structured conformation but also aids stabilization and ligand binding to WW1 domain. This salient observation implies that the WW2 domain likely serves as a chaperone to augment the physiological function of WW1 domain within WWOX. Collectively, our study lays the groundwork for understanding the molecular basis of a key protein-protein interaction pertinent to human health and disease.

Pubmed ID: 22634283

Research resources used in this publication

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Associated grants

  • Agency: NIDDK NIH HHS, United States
    Id: R01-DK079217
  • Agency: NIGMS NIH HHS, United States
    Id: R01-GM083897
  • Agency: NCI NIH HHS, United States
    Id: T32-CA119929
  • Agency: NCI NIH HHS, United States
    Id: T32 CA119929
  • Agency: NIGMS NIH HHS, United States
    Id: R01 GM083897
  • Agency: NIDDK NIH HHS, United States
    Id: R01 DK079217

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MODELLER (tool)

RRID:SCR_008395

Software tool as Program for Comparative Protein Structure Modelling by Satisfaction of Spatial Restraints. Used for homology or comparative modeling of protein three dimensional structures. User provides alignment of sequence to be modeled with known related structures and MODELLER automatically calculates model containing all non hydrogen atoms.

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Origin (tool)

RRID:SCR_014212

Software application for data analysis and graphing. Origin contains a variety of different graph types, including statistical plots, 2D and 3D vector graphs, and counter graphs. More advance version is OriginPro which offers advanced analysis tools and Apps for Peak Fitting, Surface Fitting, Statistics and Signal Processing.

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