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Structural disorder in proteins brings order to crystal growth in biomineralization.

Lajos Kalmar | Daniel Homola | Gabor Varga | Peter Tompa
Bone | 2012

Biomineralization, the generation of hard tissues of living organisms, is a process strictly regulated by hormones, enzymes and a range of regulatory proteins of which several resisted structural characterization thus far. Without actual generalizations, there have been scattered observations in the literature for the structural disorder of these proteins. To address this issue in general, we have collected SwissProt proteins involved in the formation of bone and teeth in vertebrates, annotated for biomineralization. All these proteins show an extremely high level of predicted disorder (with a mean of 53%), making them the most disordered functional class of the protein world. Exactly the same feature was established for evolutionarily more distant proteins involved in the formation of the silica wall of marine diatoms and the shell of oysters and other mollusks. Because these proteins also show an extremely biased amino acid composition, such as high negative charge, high frequency of Ser and Asp or Pro residues and repetitiveness, we also carried out a database search with these sequence features for further proteins. This search uncovered several further disordered proteins with clearly related functions, although their annotations made no mention of biomineralization. This general and very strong correlation between biomineralization, structural disorder of proteins and particular sequence features indicates that regulated growth of mineral phase in biology can only be achieved by the assistance of highly disordered proteins.

Pubmed ID: 22634174

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This is a list of tools and resources that we have found mentioned in this publication.


DisProt - Database of Protein Disorder (tool)

RRID:SCR_007097

The Database of Protein Disorder (DisProt) is a curated database that provides information about proteins that lack fixed 3D structure in their putatively native states, either in their entirety or in part. Users can BLAST sequences, browse by protein name, or view by protein function and functional subclass.

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IUPRED (tool)

RRID:SCR_014632

A web server which recognizes tertiary structures from an amino acid sequence based on estimated pairwise energy content. Users can input SWISS-PROT/TrEMBL identifier or accession number, or paste the amino acid sequence.

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Critical Assessment of Techniques for Protein Structure Prediction (tool)

RRID:SCR_008434

The main goal of CASP is to obtain an in-depth and objective assessment of our current abilities and inabilities in the area of protein structure prediction. To this end, participants will predict as much as possible about a set of soon to be known structures. These will be true predictions, not ''post-dictions'' made on already known structures. Sponsors: This resource is supported by the US National Library of Medicine (NIH/NLM), National Institute of General Medical Sciences (NIH/NIGMS), BioSapiens Network of Excellence, and HP Invent. Keywords: Clinical, Technique, Protein, Prediction, Structure,

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