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Identification of novel candidate genes involved in mineralization of dental enamel by genome-wide transcript profiling.

Rodrigo S Lacruz | Charles E Smith | Pablo Bringas | Yi-Bu Chen | Susan M Smith | Malcolm L Snead | Ira Kurtz | Joseph G Hacia | Michael J Hubbard | Michael L Paine
Journal of cellular physiology | 2012

The gene repertoire regulating vertebrate biomineralization is poorly understood. Dental enamel, the most highly mineralized tissue in mammals, differs from other calcifying systems in that the formative cells (ameloblasts) lack remodeling activity and largely degrade and resorb the initial extracellular matrix. Enamel mineralization requires that ameloblasts undergo a profound functional switch from matrix-secreting to maturational (calcium transport, protein resorption) roles as mineralization progresses. During the maturation stage, extracellular pH decreases markedly, placing high demands on ameloblasts to regulate acidic environments present around the growing hydroxyapatite crystals. To identify the genetic events driving enamel mineralization, we conducted genome-wide transcript profiling of the developing enamel organ from rat incisors and highlight over 300 genes differentially expressed during maturation. Using multiple bioinformatics analyses, we identified groups of maturation-associated genes whose functions are linked to key mineralization processes including pH regulation, calcium handling, and matrix turnover. Subsequent qPCR and Western blot analyses revealed that a number of solute carrier (SLC) gene family members were up-regulated during maturation, including the novel protein Slc24a4 involved in calcium handling as well as other proteins of similar function (Stim1). By providing the first global overview of the cellular machinery required for enamel maturation, this study provide a strong foundation for improving basic understanding of biomineralization and its practical applications in healthcare.

Pubmed ID: 21809343

Research resources used in this publication

None found

Antibodies used in this publication

None found

Associated grants

  • Agency: NIDCR NIH HHS, United States
    Id: R01 DE019629
  • Agency: NIDCR NIH HHS, United States
    Id: R37 DE013045
  • Agency: NIGMS NIH HHS, United States
    Id: R01 GM072477-05
  • Agency: NIDDK NIH HHS, United States
    Id: R01 DK077162-05
  • Agency: NIDDK NIH HHS, United States
    Id: R01 DK058563-10
  • Agency: NIDDK NIH HHS, United States
    Id: R01 DK058563
  • Agency: NIDDK NIH HHS, United States
    Id: DK077162
  • Agency: NIDCR NIH HHS, United States
    Id: R01 DE013045
  • Agency: NIDCR NIH HHS, United States
    Id: R01 DE006988
  • Agency: NIDCR NIH HHS, United States
    Id: DE013045
  • Agency: NIGMS NIH HHS, United States
    Id: R01 GM072447
  • Agency: NIDCR NIH HHS, United States
    Id: DE006988
  • Agency: NIDDK NIH HHS, United States
    Id: R01 DK077162
  • Agency: NIDCR NIH HHS, United States
    Id: R01 DE006988-26
  • Agency: NIDCR NIH HHS, United States
    Id: R01 DE019629-02
  • Agency: NIGMS NIH HHS, United States
    Id: GM072447
  • Agency: NIDCR NIH HHS, United States
    Id: R37 DE013045-10
  • Agency: NIDCR NIH HHS, United States
    Id: DE013404
  • Agency: NIDCR NIH HHS, United States
    Id: R01 DE013404-05
  • Agency: NIDCR NIH HHS, United States
    Id: R01 DE013404
  • Agency: NIDCR NIH HHS, United States
    Id: R01 DE019629-01
  • Agency: NIGMS NIH HHS, United States
    Id: R01 GM072477
  • Agency: NIDCR NIH HHS, United States
    Id: DE019629
  • Agency: NIDDK NIH HHS, United States
    Id: DK058563

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This is a list of tools and resources that we have found mentioned in this publication.


WebGestalt: WEB-based GEne SeT AnaLysis Toolkit (tool)

RRID:SCR_006786

Web based gene set analysis toolkit designed for functional genomic, proteomic, and large-scale genetic studies from which large number of gene lists (e.g. differentially expressed gene sets, co-expressed gene sets etc) are continuously generated. WebGestalt incorporates information from different public resources and provides a way for biologists to make sense out of gene lists. This version of WebGestalt supports eight organisms, including human, mouse, rat, worm, fly, yeast, dog, and zebrafish.

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SABiosciences (tool)

RRID:SCR_008578

SABiosciences, as part of QIAGEN, offers nucleic acid (DNA, RNA, miRNA) and protein isolation, preparation and purification services, as well as assay,array, sequencing, NGS and biomarker services and lab essentials.Offers PCR services, assays, array systems, and expression vectors. Acquired by QIAGEN in 2009.

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