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http://covidnlp.tavlab.iiitd.edu.in/
Web Application for distilling systemic implications of COVID-19 pandemic with Natural Language Processing.
Proper citation: CovidNLP (RRID:SCR_018513) Copy
https://www.thelabworldgroup.com/mettler-toledo-pb303-precision-balance
Miligram balance that is used for weighing, tarring, percent weighing, and dynamic weighing for unstable samples. Has maximum capacity of 310 grams. Lab balance utilizes mono block weighing technology with permanent shock protection and built in overload protection as well as automatic calibration.
Proper citation: Mettler: PB303-S Milligram Balance (RRID:SCR_018592) Copy
Invitrogen benchtop automated cell counter. Can perform cell counts, viability calculations, hemocytometry, fluorescent protein expression, and measure fluorescence capabilities. There are also reusable slides, fluorescence capabilities, and brightfield fluorescence channels.
Proper citation: Thermo Fisher: Life Technologies: Countess Automated Cell Counter (RRID:SCR_018591) Copy
http://shiny.ieis.tue.nl/sprite/
Web app to generate possible distributions of data matching given mean, SD, sample size, and range. Used for recovering data from summary statistics. Implementation of SPRITE in R programming environment.
Proper citation: rSPRITE (RRID:SCR_018524) Copy
https://www.microscopyu.com/museum/model-smz1500-stereomicroscope
SMZ1500 stereoscopic zoom microscope is system with apochromatic objectives, zoom ratio of 15 to 1, range of magnifications from 0.75x to 11.25x for total magnifying capability of 3.75x up to 540x, and is best for in depth imaging.Zoom knob allows to zoom from 1x to 11x at 1x-intervals without interrupting observations. Other facets include high eyepoint eyepieces with built-in diopter adjustments, wide field of view, and built-in aperture diaphragm for achieving optimal depth of focus and improved photomicrography.Provides options of either low eye-level viewing tube or tilting eyepiece tube, with or without eye-level risers. Three different diascopic stands with built-in power supplies may also be utilized with instrument, or standard stand that features low profile for increased clearance.
Proper citation: Nikon: SMZ1500 Zoom Stereoscope (RRID:SCR_018605) Copy
https://www.gmi-inc.com/product/packard-cobra-gamma-counter-series/
Gamma counter available in single, five, or ten detector configurations. Can count RIA tubes, 16x100mm and variety of smaller micro tubes using available adapter.This instrument has dot Matrix Printer, tube racks, and protocol ID tags.Single detector model is available in 2 inch or 3 inch crystal configurations for research grade capabilities.
Proper citation: Packard: Cobra 5000 Gamma Counter (RRID:SCR_018609) Copy
https://mass-spec.stanford.edu/instruments
Shimadzu 8030 triple quadrupole mass spectrometer used for targeted quantitation applications. Listed by Stanford University Mass Spectrometry Vincent Coates Foundation Instruments.
Proper citation: Stanford Shimadzu 8030 LC/MS mass spectrometer (RRID:SCR_018699) Copy
Dual channel fluorimeter for fluorescence measurements when calibrated with known concentration to measure compounds at low concentration with low assay volume.
Proper citation: Promega: TBS-380 Fluorimeter (RRID:SCR_018615) Copy
Microplate luminometer that features two optional injectors and reads both glow- and flash-luminescent reactions in 96-well plates. The sensitivity and range enable a wide range of luminescent assays, including Promega bioluminescent reporter, cell-based and biochemical assays., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: Promega: GloMax 96 Microplate Luminometer (RRID:SCR_018614) Copy
https://mass-spec.stanford.edu/instruments
Agilent GC/MS is single quadrupole instrument with electron ionization. GC/MS runs under ChemStation open access software, and trained open access users select from menu of standard methods to analyze their samples.
Proper citation: Agilent: 7890/5975 GC/MS system (RRID:SCR_018695) Copy
Web platform for downstream analysis and visualization of proteomics data. Server that facilitates integrated annotation, analysis and visualization of quantitative proteomics data, with emphasis on PTM networks and integration with LINCS library of chemical and genetic perturbation signatures in order to provide further mechanistic and functional insights. Primary input for server consists of set of peptides or proteins, optionally with PTM sites, and their corresponding abundance values.
Proper citation: piNET (RRID:SCR_018693) Copy
Sequencing and quantification platform for epigenetics, mutation gene expression analysis, and microbial identification and resistance typing. With its 96-well format, automatic base-calling function, and dedicated software solutions for methylation analysis and assay design.
Proper citation: Qiagen: PyroMark Q96 System (RRID:SCR_018617) Copy
Liquid handling system for production of complex liquid formulations produced from individual stock solutions of various chemical and liquid properties. With a CV of less than 2%.
Proper citation: Rigaku: Alchemist II Liquid Handler (RRID:SCR_018625) Copy
Web tool for analyzing regulatory potential of noncoding sequences. rVISTA web server is interconnected with TRANSFAC database, allowing users to either search for matrices present in TRANSFAC library collection or search for user defined consensus sequences. rVISTA 2.0 web server is used for high throughput discovery of cis-regulatory elements. Can process alignments generated by zPicture and blastz alignment programs or use pre-computed pairwise alignments of several vertebrate genomes available from ECR Browser and GALA database. Evolutionary analysis of transcription factor binding sites.
Proper citation: rVista (RRID:SCR_018707) Copy
http://funcoup.sbc.su.se/search/
Database of genome wide functional coupling networks. Provides tools to explore predicted networks and to retrieve detailed information about data underlying each prediction. Web service for functional coupling search.
Proper citation: FunCoup (RRID:SCR_018711) Copy
https://github.com/GGFHF/NGScloud2
Software tool for RNA-seq analysis of non model species using cloud computing. Provides user friendly front end to operate Amazon hardware resources and to control workflows of bioinformatic analysis of de novo RNA-seq, reference-based RNA-seq and functional annotation specifically oriented to plant species.
Proper citation: NGScloud2 (RRID:SCR_018716) Copy
http://tools.thermofisher.com/content/sfs/brochures/geneatlas_system_brochure.pdf
System for processing Affymetrix microarrays. Microarray analysis system. Includes array strip and hybridization assembly, Fluidics station, Imaging station.
Proper citation: Thermo Fisher: GeneAtlas System (RRID:SCR_018715) Copy
https://www.thermofisher.com/order/catalog/product/ND-8000-GL
Microvolume UV Vis spectrophotometer for nucleic acid and protein quantification that can measure multiple samples using 1 to 2 uL of samples. Can analyze spectrum of 220nm to 750nm and measure 96 samples in less than six minutes. Can measure multiple samples in one measurement cycle, up to eight samples at one time. Has single sample mode. Can analyze the full spectrum from 220 to 750nm and calculates sample purity ratios 260/280.
Proper citation: Thermo Fisher: NanoDrop 8000 Spectrophotometer (RRID:SCR_018600) Copy
http://www.prisma-statement.org/
Evidence based minimum set of items for reporting in systematic reviews and meta analyses. Focuses on reporting of reviews evaluating randomized trials, but can also be used as basis for reporting systematic reviews of other types of research, particularly evaluations of interventions.
Proper citation: PRISMA (RRID:SCR_018721) Copy
http://www.consort-statement.org/
Standards for transparent trials reporting. Encompasses various initiatives developed by CONSORT Group to alleviate problems arising from inadequate reporting of randomized controlled trials. Main product of CONSORT is CONSORT Statement, which is evidence based, minimum set of recommendations for reporting randomized trials. CONSORT Statement is endorsed by medical journals and leading editorial organizations.
Proper citation: CONSORT (RRID:SCR_018720) Copy
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