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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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HAST Resource Report Resource Website 1+ mentions |
HAST (RRID:SCR_018247) | data processing software, data analysis software, software application, software resource | Software tool for partition stLFR reads based on trio binning using prenatally unique markers. Haplotype resolved assembly for synthetic long reads using Trio-Binning strategy. | Partition stLFR reads, stLFR read, trio binning, haplotype resolved assembly, synthetic long read, reads assembly | Free, Available for download, Freely available | SCR_018247 | Haplotype-resolved Assembly for Synthetic long reads using a Trio-binning strategy | 2026-08-01 12:05:56 | 1 | ||||||||||
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CuGenDB Resource Report Resource Website 100+ mentions |
CuGenDB (RRID:SCR_018401) | CuGenDB | topical portal, data or information resource, database, portal | Database to facilitate genomic and genetic data distribution, analysis, mining and integration for cucurbits. To store, mine, analyze, integrate and disseminate Cucurbitaceae family datasets and to provide central portal for cucurbit research and breeding community. Central portal for comparative and functional genomics of cucurbit crops. | Genomic data, genetic data, cucurbit, data distribution, data analysis, data mining, data integration, dataset, comparative genomics, functional genomics, cucurbit crop, FASEB list | USDA National Institute of Food and Agriculture Specialty Crop Research Initiative ; US-Israel Binational Agricultural Research and Development Fund ; USDA Agricultural Research Service ; International Cucurbit Genomics Initiative |
PMID:30321383 | Free, Freely available | SCR_018401 | Cucurbit Genomics Database, Cucurbitaceae family Genomics Database | 2026-08-01 12:06:13 | 165 | |||||||
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Planmeca Romexis Resource Report Resource Website 1+ mentions |
Planmeca Romexis (RRID:SCR_018403) | data acquisition software, software application, software resource, data processing software, image acquisition software | Software tool as 3D imaging software. Flexible and intuitive all-in-one dental software platform. Provides set of tools to meet imaging needs by any dental facility. | 3D imaging software, dental software, 3D image, dental | Restricted | SCR_018403 | 2026-08-01 12:06:13 | 1 | |||||||||||
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Biorender Resource Report Resource Website 10000+ mentions |
Biorender (RRID:SCR_018361) | software resource, web application, service resource | Web tool for graphical illustrations for biological systems by BioRender. Used for articles and presentations. Collection of pre made icons and templates from life science fields for scientific illustrations. Customized icons possible on request. | Graphical illustration, biological system, pre made icon, pre made template, scientific illustration, customized icon | Restricted | SCR_018361 | 2026-08-01 12:06:20 | 21581 | |||||||||||
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Positional Gene Enrichment Resource Report Resource Website 1+ mentions |
Positional Gene Enrichment (RRID:SCR_018360) | PGE | data access protocol, service resource, production service resource, software resource, web service, analysis service resource | Web tool implementing positional gene enrichment analysis of gene sets for high resolution identification of over represented chromosomal regions. | Fund for Scientific Research Flanders ; UGent |
PMID:18346969 | Free, Freely available | http://homes.esat.kuleuven.be/~bioiuser/pge/ | SCR_018360 | Positional Gene Enrichment, PGE analysis | 2026-08-01 12:06:13 | 1 | |||||||
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SEDFIT Resource Report Resource Website 10+ mentions |
SEDFIT (RRID:SCR_018365) | data processing software, data analysis software, software application, software resource | Software tool for analytical ultracentrifugation developed by Dynamics of Macromolecular Assembly group of Laboratory of Cellular Imaging and Macromolecular Biophysics, National Institute of Biomedical Imaging and Bioengineering, NIH. Used for biophysical analysis of macromolecular assembly. | Analytical ultracentrifugation, biophysical analysis, macromolecular assembly, data, analysis, National Institute of Biomedical Imaging and Bioengineering | is listed by: SoftCite | NIH | Free, Available for download, Freely available | SCR_018365 | SEDFIT version 14.7g | 2026-08-01 12:06:13 | 25 | ||||||||
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NanoSim Resource Report Resource Website 10+ mentions |
NanoSim (RRID:SCR_018243) | software resource, software application, simulation software | Software tool as Nanopore sequence read simulator based on statistical characterization. Oxford Nanopore Technology sequence simulator written in Python and R. Benefits development of scalable next generation sequencing technologies for long nanopore reads, including genome assembly, mutation detection, and metagenomic analysis software. | Nanopore sequence read, sequence simulator, Oxford Nanopore Technology, next generation sequencing, long nanopore read, genome assembly, mutation detection, bio.tools, bio.tools |
is listed by: Debian is listed by: bio.tools |
NHGRI R01 HG007182; Genome Canada ; Genome British Columbia ; British Columbia Cancer Foundation ; University of British Columbia |
DOI:10.1093/gigascience/gix010 | Free, Available for download, Freely available | biotools:trans-nanosim, biotools:nanosim | https://www.bcgsc.ca/resources/software/nanosim, https://bio.tools/nanosim, https://bio.tools/Trans-NanoSim | SCR_018243 | 2026-08-01 12:06:19 | 18 | ||||||
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TinderMIX Resource Report Resource Website 1+ mentions |
TinderMIX (RRID:SCR_018364) | data processing software, data analysis software, software application, software resource | Software tool as framework for dose and time dependent gene expression analysis which aims to identify groups of genes that show dynamic dose response behaviour. Software R package to cluster gene expression by contour plots. Used to analyse toxicogenomics data with multiple dose levels and time points and to identify expression patterns with respect to both variables and to cluster molecular features. | Dose dependent gene expression, time dependent gene expression, gene expression analysis, dose response, cluster gene expression, contour plot, toxicogenomics data analysis, time point, dose level, expression pattern identification, data | Free, Available for download, Freely available | https://rdrr.io/github/angy89/TinderMIX/, https://github.com/angy89/TinderMIX/ | SCR_018364 | Time-Dose INtegrated moDelling of toxicogenomics data | 2026-08-01 12:05:58 | 1 | |||||||||
|
PredGPI Resource Report Resource Website 10+ mentions |
PredGPI (RRID:SCR_018363) | data or information resource, data access protocol, service resource, production service resource, software resource, web service, analysis service resource | Prediction system for GPI-anchored proteins. Used to predict presence of GPI-anchor and position of omega site. Prediction server based on support vector machine for discrimination of anchoring signal, and on Hidden Markov Model for prediction of most probable omega site. Method for screening whole proteomes. | GPI anchored protein predictor, GPI anchored protein, predict presence of GPI anchor, predict position of omega site, discrimination of anchoring signal, prediction of probable omega site, data, screening whole proteome | European Union VI Framework Programme ; FIRB 2003 LIBI–International Laboratory of Bioinformatics |
PMID:18811934 | Free, Freely available | SCR_018363 | 2026-08-01 12:06:20 | 17 | |||||||||
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STARANISO Resource Report Resource Website 50+ mentions |
STARANISO (RRID:SCR_018362) | data access protocol, service resource, production service resource, software resource, web service, analysis service resource | Web server for anisotropy of diffraction limit and Bayesian estimation of structure amplitudes by Global Phasing Limited. Server uses DEBYE and STARANISO software to perform anisotropic cut off of merged intensity data, to perform Bayesian estimation of structure amplitudes and to apply anisotropic correction to data. | Anisotropy, diffraction limit, Bayesian estimation, structure amplitude, Global Phasing Limited, anisotropic cut off, data, anisotropic correction data | Global Phasing Consortium | Free, Freely available | SCR_018362 | The STARANISO Server, STARANISO Server, STARANISO server | 2026-08-01 12:06:13 | 70 | |||||||||
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Fluidigm: C1 Single-Cell Automated Preparation System Resource Report Resource Website |
Fluidigm: C1 Single-Cell Automated Preparation System (RRID:SCR_018578) | instrument resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on November 14,2023.Automated preparation system that isolates and prepares single cell templates for analysis. It can analyze mRNA and DNA sequencing, epigenetics or miRNA expression. It can extract, reverse transcribe, amplify, and analyze gene expression. | Single-Cell Auto Prep System, Instrument, Equipment, Fluidigm, USEDit, ABRF | is listed by: USEDit | THIS RESOURCE IS NO LONGER IN SERVICE | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018578.pdf | SCR_019930, Model_Number_C1 | https://asrc.gc.cuny.edu/instruments/c1-single-cell-autoprep-system/, https://alab.com.pl/produkt-plik/138/2191/MF_Brochure_FY14_C1System_PN100-5477-C1.pdf | SCR_018578 | 2026-08-01 12:06:22 | 0 | |||||||
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Leica: SM2000 R Sliding microtome Resource Report Resource Website 1+ mentions |
Leica: SM2000 R Sliding microtome (RRID:SCR_018456) | instrument resource | Sliding microtome from Leica Biosystems with low maintenance cross roller bearing slideways designed to easily section either paraffin embedded or fixed, frozen specimens. Features knife holder for both standard knives and disposable blades. Please note: this product is discontinued and no longer available for sale. | Microtome, sliding microtome, cross roller bearing slideway, sectioning, paraffing embedded speciment, fixed speciment, frozen speciment, knife holder, equipment, instrument | Restricted | https://rankinbiomed.com/wp-content/uploads/Leica-SM2000R-Brochure.pdf | SCR_018456 | Leica SM2000R, Leica SM2000 R | 2026-08-01 12:06:14 | 5 | |||||||||
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Thermo Fisher: n125 Homogenizer Resource Report Resource Website |
Thermo Fisher: n125 Homogenizer (RRID:SCR_018576) | instrument resource | Homogenizer with speeds from 8,000 to 30,000 RPM for volumes of up to 100ml. Homogenizer for production of dispersions and emulsions, plant tissues, human tissues, animal tissues, resins, and pigments. | Homogenizer, Instrument, Equipment, Fisher Scientific, USEDit, ABRF | is listed by: USEDit | Commercially available | SCR_019922, Model_Number_n125 | https://assets.fishersci.com/TFS-Assets/LSG/manuals/homogenizer_man.pdf | SCR_018576 | 2026-08-01 12:06:15 | 0 | ||||||||
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Thermo Fisher: Isotemp 280A Vacuum Oven Resource Report Resource Website 1+ mentions |
Thermo Fisher: Isotemp 280A Vacuum Oven (RRID:SCR_018575) | instrument resource | Fisher Scientific Isotemp 280A is a Vacuum Oven offers a temperature range from ambient up to 200C with internal dimensions of 11.125"D x 9.75"W x 9.75"H. Front-mounted power indicator and dial thermometer with top-mounted analog vacuum gauge. The 280A's hydraulic thermostat controls temperature. Large glass panel front door and stainless steel chamber. | Isotemp, Vacuum Oven, Instrument Equipment, USEDit | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_020143.pdf | Model_Number_280A, SCR_020143 | https://www.marshallscientific.com/v//vspfiles/files/manuals/FS280A.pdf, http://liu.umd.edu/files/280%20A%20oven.pdf | SCR_018575 | 2026-08-01 12:06:22 | 9 | ||||||||
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Stan Resource Report Resource Website 100+ mentions |
Stan (RRID:SCR_018459) | software resource, software application, programming language, simulation software | Probabilistic programming language for specifying statistical models. Defines log probability function over parameters conditioned on specified data and constants. Platform for statistical modeling and high performance statistical computation. Provides full Bayesian inference for posterior expectations including parameter estimation and posterior predictive inference by defining appropriate derived quantities of interest. | Statistical model specification, statistical modeling, statistical computation, log probability function, parameter, data, constant, parameter estimation | DOI:1509.07164 DOI:10.18637/jss.v076.i01 |
Free, Available for download, Freely available | SCR_018459 | 2026-08-01 12:05:59 | 173 | ||||||||||
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Pilot: 9W Pilot Diode Laser Resource Report Resource Website 1+ mentions |
Pilot: 9W Pilot Diode Laser (RRID:SCR_018458) | instrument resource | Diode laser, 810 nm wavelength with manufacturer from CAO group, USA. Commodity code: 002-00102. Used for rehabilitation procedures to promote healing, reduce pain and inflammation. | Diode laser, CAO group, ChiropracticOutfitters, 810 nm wavelength | Restricted | SCR_018458 | PILOT (TM) Diode laser | 2026-08-01 12:06:14 | 1 | ||||||||||
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Gilson: GX-271 HPLC System Resource Report Resource Website |
Gilson: GX-271 HPLC System (RRID:SCR_018579) | instrument resource | HPLC liquid handler with midsize bed capacity and fraction collector. It has maximum flow rates up to 200 mL per min, injection loop volumes of 2 uL to 25 mL, and max sample mass of 15 grams per injection. | HPLC System, Instrument, Equipment, USEDit, Gilson, ABRF | is listed by: USEDit | SCR_019963, Model_Number_GX_271 | SCR_018579 | 2026-08-01 12:06:15 | 0 | ||||||||||
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LUNGevity Resource Report Resource Website 1+ mentions |
LUNGevity (RRID:SCR_018570) | portal, organization portal, data or information resource, funding resource | Portal dedicated to funding lung cancer research by LUNGevity Foundation. Supports patient focused research and convene multi stakeholder meetings to streamline research process and accelerate progress to patients. Seeks to empower patients to be active decision makers in their treatment process through educational resources, online peer-to-peer support, and in-person survivorship programs. | Funding lung cancer, funding, lung cancer, LUNGevity Foundation, patient focused research support | lung cancer | Restricted | SCR_018570 | 2026-08-01 12:06:22 | 3 | ||||||||||
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Leica: VT1200S vibratome Resource Report Resource Website 10+ mentions |
Leica: VT1200S vibratome (RRID:SCR_018453) | instrument resource | Fully automated Leica VT1200 S vibrating blade microtome designed for sectioning for cutting fresh and fixed tissue in neuroscience by Leica Biosystems. | Vibrating blade microtome, vibratome, sectioning, cutting, fresh tissue, fixed tissue, instrument, equipment | Restricted | https://www.leicabiosystems.com/sites/default/files/media_product-download/2021-03/Leica_VT1200S_IFU_1v7J_en.pdf | SCR_018453 | Leica VT1200 S vibrating blade microtome, Leica VT1200S | 2026-08-01 12:06:14 | 35 | |||||||||
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Precisionary: Compresstome VF-300 Resource Report Resource Website 1+ mentions |
Precisionary: Compresstome VF-300 (RRID:SCR_018452) | instrument resource | Vibrating microtome for cutting tissue slices, similar to cryostats and vibrating microtomes. Fully automated for sectioning fixed and live tissues, with down to 1 um precision. Can cut tissue slice thicknesses ranging from 3 um to 2000 um, at 1 um intervals. | Vibrating microtome, cutting tissue slice, automated, fixed tissue, live tissue, tissue slice, instrument, equipment | Restricted | SCR_018452 | Compresstome VF-300 vibrating microtome | 2026-08-01 12:06:20 | 1 |
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