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http://lrcv-crp-sante.s3-website-us-east-1.amazonaws.com/

A gene set analysis algorithm for biomarker identification in the cloud.

Proper citation: YunBe (RRID:SCR_008740) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/diamond/

Software to: view dicom files and assemble them into 3D volumes. View and convert between Analyze, Nifti, and Interfile. Classify and organize dicoms and 3D volumes using metadata. Search and report on a collection of scans.

Proper citation: DIAMOND (RRID:SCR_009457) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/cbs-tools/

A fully automated processing pipeline for cortical analysis of structural MR images at a resolution of up to 400������m, including skull stripping, whole brain segmentation, cortical extraction, surface inflation and mapping, as well as dedicated tools for profile estimation across the cortical thickness. The tools are released as a set of plug-ins for the MIPAV software package and the JIST pipeline environment. They are therefore cross-platform and compatible with a wide variety of file formats.

Proper citation: CBS High-Res Brain Processing Tools (RRID:SCR_009452) Copy   

•   Source: SciCrunch Registry

http://bioinformatics.fccc.edu/software/OpenSource/FGDP/FGDP.shtml

A Java-based, Microarray or Genechip data analysis system.

Proper citation: FGDP (RRID:SCR_008910) Copy   

•   Source: SciCrunch Registry

http://code.google.com/p/elk-reasoner/

ELK is an ontology reasoner with the goal of supporting the OWL 2 EL profile. ELK is a specialized reasoner for the lightweight ontology language OWL EL. The practical utility of ELK is in its combination of high performance and comprehensive support for language features. At its core, ELK employs a consequence-based reasoning engine that can take advantage of multi-core and multi-processor systems. A modular architecture allows ELK to be used as a stand-alone application, Protege plug-in, or programming library (either with or without the OWL API).

Proper citation: elk-reasoner (RRID:SCR_008913) Copy   

•   Source: SciCrunch Registry

http://www.biomatik.com/

An Antibody supplier, Core facility

Proper citation: Biomatik (RRID:SCR_008944) Copy   

•   Source: SciCrunch Registry

https://www.beckmancoulter.com/

An Organization portal, Material service resource, Antibody supplier, Instrument supplier

Proper citation: Beckman Coulter (RRID:SCR_008940) Copy   

•   Source: SciCrunch Registry

http://www.biomedcentral.com/1471-2105/14/357/abstract

Sample size calculation based on exact test for assessing differential expression analysis in RNA-seq data. R code is available from the corresponding author.

Proper citation: A sample size calculation method (RRID:SCR_009469) Copy   

•   Source: SciCrunch Registry

http://www.cibiv.at/~niko/ngc/

A compressor for aligned HTS sequencing data that enables the complete lossless and lossy compression of mapped alignment data stored in SAM/BAM files.

Proper citation: NGC (RRID:SCR_009342) Copy   

•   Source: SciCrunch Registry

https://sekisuidiagnostics.com/all-products/

An Antibody supplier.

Proper citation: AMERICAN DIAGNOSTICA (RRID:SCR_008928) Copy   

•   Source: SciCrunch Registry

http://en.wikibooks.org/wiki/Pharmacology

Pharmacology is a wikibook covering topics within pharmacology and pharmaceutical sciences.

Proper citation: Pharmacology (RRID:SCR_009017) Copy   

•   Source: SciCrunch Registry

http://geckoe.sourceforge.net/

A complete, high-capacity centralized gene expression analysis system, developed in response to the needs of a distributed user community.

Proper citation: Gecko (RRID:SCR_009001) Copy   

•   Source: SciCrunch Registry

http://homes.cs.washington.edu/~dcjones/quip/

Compresses next-generation sequencing data in the FASTQ and SAM/BAM formats with extreme prejudice.

Proper citation: Quip (RRID:SCR_009362) Copy   

•   Source: SciCrunch Registry

http://www.sigmaaldrich.com

American chemical, life science and biotechnology company owned by Merck KGaA. Merger of Sigma Chemical Company and Aldrich Chemical Company. Provides organic and inorganic chemicals, building blocks, reagents, advanced materials and stable isotopes for chemical synthesis, medicinal chemistry and materials science, antibiotics, buffers, carbohydrates, enzymes, forensic tools, hematology and histology, nucleotides, proteins, peptides, amino acids and their derivatives.

Proper citation: Sigma-Aldrich (RRID:SCR_008988) Copy   

•   Source: SciCrunch Registry

https://www.scbt.com/scbt/home/

An Antibody supplier

Proper citation: Santa Cruz Biotechnology (RRID:SCR_008987) Copy   

•   Source: SciCrunch Registry

http://www.origene.com/

A research tool company focused on the creation of the largest commercial collection of full-length human cDNAs in a standard expression vector. The availability of the complete human genome sequence and the subsequent development of genome-based tools have enabled the identification of relevant drug targets through system biology approaches. OriGene''s vision is to prepare comprehensive, genome wide research tools and technology platforms to enable scientists to study complete biological pathways, thus enabling a better understanding of disease mechanisms including cancer and stem cell research. OriGene Technologies uses high-throughput, genome wide approach to develop products for pharmaceutical, biotechnology, and academic research. Their flagship product is the cDNA clone collection, a searchable gene bank of over 30,000 human full-length TrueClone cDNA collection and over 25,000 TrueORF cDNA clones. From their TrueORF cDNA clones, they have developed the largest offering of full length human proteins expressed in mammalian cells, ideal for functional studies. Their TrueMAB project develops mouse monoclonal antibodies against protein antigens with the goal to develop protein assays for every human protein. They also offer complete molecular biology services from codon optimization, gene synthesis, protein expression and assay development. In addition, they offer unique gene expression products such as TissueScan cancer tissue qPCR arrays and tissue biorepository for biomarker discovery and validation.

Proper citation: OriGene (RRID:SCR_008985) Copy   

•   Source: SciCrunch Registry

http://www.5prime.com

THIS RESOURCE IS NO LONGER IN SERVICE, documented on February 2nd, 2022. Antibody supplier.

Proper citation: 5 PRIME (RRID:SCR_008982) Copy   

•   Source: SciCrunch Registry

http://www.3hbiomedical.com/

An Antibody supplier

Proper citation: 3H Biomedical AB (RRID:SCR_008981) Copy   

•   Source: SciCrunch Registry

http://bioinformatics.ua.pt/software/mfcompress/

A compression tool for FASTA and multi-FASTA files.

Proper citation: MFCompress (RRID:SCR_009301) Copy   

•   Source: SciCrunch Registry

http://bioinformatics.research.nicta.com.au/software/rlz/

Optimized relative Lempel-Ziv compression of genomes.

Proper citation: RLZ (RRID:SCR_009420) Copy   

•   Source: SciCrunch Registry