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https://github.com/BGI-Qingdao/HAST
Software tool for partition stLFR reads based on trio binning using prenatally unique markers. Haplotype resolved assembly for synthetic long reads using Trio-Binning strategy.
Proper citation: HAST (RRID:SCR_018247) Copy
Database to facilitate genomic and genetic data distribution, analysis, mining and integration for cucurbits. To store, mine, analyze, integrate and disseminate Cucurbitaceae family datasets and to provide central portal for cucurbit research and breeding community. Central portal for comparative and functional genomics of cucurbit crops.
Proper citation: CuGenDB (RRID:SCR_018401) Copy
https://www.planmeca.com/software/
Software tool as 3D imaging software. Flexible and intuitive all-in-one dental software platform. Provides set of tools to meet imaging needs by any dental facility.
Proper citation: Planmeca Romexis (RRID:SCR_018403) Copy
Web tool for graphical illustrations for biological systems by BioRender. Used for articles and presentations. Collection of pre made icons and templates from life science fields for scientific illustrations. Customized icons possible on request.
Proper citation: Biorender (RRID:SCR_018361) Copy
Web tool implementing positional gene enrichment analysis of gene sets for high resolution identification of over represented chromosomal regions.
Proper citation: Positional Gene Enrichment (RRID:SCR_018360) Copy
https://sedfitsedphat.nibib.nih.gov/software/default.aspx
Software tool for analytical ultracentrifugation developed by Dynamics of Macromolecular Assembly group of Laboratory of Cellular Imaging and Macromolecular Biophysics, National Institute of Biomedical Imaging and Bioengineering, NIH. Used for biophysical analysis of macromolecular assembly.
Proper citation: SEDFIT (RRID:SCR_018365) Copy
https://github.com/bcgsc/NanoSim
Software tool as Nanopore sequence read simulator based on statistical characterization. Oxford Nanopore Technology sequence simulator written in Python and R. Benefits development of scalable next generation sequencing technologies for long nanopore reads, including genome assembly, mutation detection, and metagenomic analysis software.
Proper citation: NanoSim (RRID:SCR_018243) Copy
https://github.com/grecolab/TinderMIX
Software tool as framework for dose and time dependent gene expression analysis which aims to identify groups of genes that show dynamic dose response behaviour. Software R package to cluster gene expression by contour plots. Used to analyse toxicogenomics data with multiple dose levels and time points and to identify expression patterns with respect to both variables and to cluster molecular features.
Proper citation: TinderMIX (RRID:SCR_018364) Copy
http://gpcr.biocomp.unibo.it/predgpi/pred.htm
Prediction system for GPI-anchored proteins. Used to predict presence of GPI-anchor and position of omega site. Prediction server based on support vector machine for discrimination of anchoring signal, and on Hidden Markov Model for prediction of most probable omega site. Method for screening whole proteomes.
Proper citation: PredGPI (RRID:SCR_018363) Copy
http://staraniso.globalphasing.org/cgi-bin/staraniso.cgi
Web server for anisotropy of diffraction limit and Bayesian estimation of structure amplitudes by Global Phasing Limited. Server uses DEBYE and STARANISO software to perform anisotropic cut off of merged intensity data, to perform Bayesian estimation of structure amplitudes and to apply anisotropic correction to data.
Proper citation: STARANISO (RRID:SCR_018362) Copy
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on November 14,2023.Automated preparation system that isolates and prepares single cell templates for analysis. It can analyze mRNA and DNA sequencing, epigenetics or miRNA expression. It can extract, reverse transcribe, amplify, and analyze gene expression.
Proper citation: Fluidigm: C1 Single-Cell Automated Preparation System (RRID:SCR_018578) Copy
Sliding microtome from Leica Biosystems with low maintenance cross roller bearing slideways designed to easily section either paraffin embedded or fixed, frozen specimens. Features knife holder for both standard knives and disposable blades. Please note: this product is discontinued and no longer available for sale.
Proper citation: Leica: SM2000 R Sliding microtome (RRID:SCR_018456) Copy
https://www.marshallscientific.com/Fisher-Scientific-PowerGen-125-Homogenizer-p/fs-pg125.htm
Homogenizer with speeds from 8,000 to 30,000 RPM for volumes of up to 100ml. Homogenizer for production of dispersions and emulsions, plant tissues, human tissues, animal tissues, resins, and pigments.
Proper citation: Thermo Fisher: n125 Homogenizer (RRID:SCR_018576) Copy
https://www.marshallscientific.com/Fisher-Scientific-Isotemp-280A-Vacuum-Oven-p/fs-280a.htm
Fisher Scientific Isotemp 280A is a Vacuum Oven offers a temperature range from ambient up to 200C with internal dimensions of 11.125"D x 9.75"W x 9.75"H. Front-mounted power indicator and dial thermometer with top-mounted analog vacuum gauge. The 280A's hydraulic thermostat controls temperature. Large glass panel front door and stainless steel chamber.
Proper citation: Thermo Fisher: Isotemp 280A Vacuum Oven (RRID:SCR_018575) Copy
Probabilistic programming language for specifying statistical models. Defines log probability function over parameters conditioned on specified data and constants. Platform for statistical modeling and high performance statistical computation. Provides full Bayesian inference for posterior expectations including parameter estimation and posterior predictive inference by defining appropriate derived quantities of interest.
Proper citation: Stan (RRID:SCR_018459) Copy
https://www.chiropracticoutfitters.com/9W-Pilot-Laser-p/pilot-diode-laser.htm
Diode laser, 810 nm wavelength with manufacturer from CAO group, USA. Commodity code: 002-00102. Used for rehabilitation procedures to promote healing, reduce pain and inflammation.
Proper citation: Pilot: 9W Pilot Diode Laser (RRID:SCR_018458) Copy
https://www.gilson.com/verity-271-hplc-system.html
HPLC liquid handler with midsize bed capacity and fraction collector. It has maximum flow rates up to 200 mL per min, injection loop volumes of 2 uL to 25 mL, and max sample mass of 15 grams per injection.
Proper citation: Gilson: GX-271 HPLC System (RRID:SCR_018579) Copy
Portal dedicated to funding lung cancer research by LUNGevity Foundation. Supports patient focused research and convene multi stakeholder meetings to streamline research process and accelerate progress to patients. Seeks to empower patients to be active decision makers in their treatment process through educational resources, online peer-to-peer support, and in-person survivorship programs.
Proper citation: LUNGevity (RRID:SCR_018570) Copy
Fully automated Leica VT1200 S vibrating blade microtome designed for sectioning for cutting fresh and fixed tissue in neuroscience by Leica Biosystems.
Proper citation: Leica: VT1200S vibratome (RRID:SCR_018453) Copy
https://precisionary.com/compresstome-vf-300-vibrating-microtome/
Vibrating microtome for cutting tissue slices, similar to cryostats and vibrating microtomes. Fully automated for sectioning fixed and live tissues, with down to 1 um precision. Can cut tissue slice thicknesses ranging from 3 um to 2000 um, at 1 um intervals.
Proper citation: Precisionary: Compresstome VF-300 (RRID:SCR_018452) Copy
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