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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Vivli Resource Report Resource Website 1000+ mentions |
Vivli (RRID:SCR_018080) | data or information resource, service resource, nonprofit organization | Independent, non-profit organization that has developed global data-sharing and analytics platform to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through creation and implementation of sustainable global data-sharing enterprise. Our focus is on sharing individual participant-level data from completed clinical trials. Users can search listed studies, request data sets from data contributors, aggregate data, or share data of their own. Vivli (Center for Clinical Research Data) is launching a portal to share participant-level data from COVID trials. | Global data sharing, clinical research data, data, sharing, analytical platform, clinical trial, COVID-19-related trials |
is used by: NIH Heal Project is recommended by: NIDDK Information Network (dkNET) is listed by: Data and Computational Resources to Address COVID-19 is listed by: re3data.org is listed by: DataCite is listed by: FAIRsharing |
COVID-19 | Doris Duke Charitable Foundation ; Leona M. and Harry B. Helmsley Charitable Trust ; Lyda Hill Philanthropies ; Phrma |
Restricted | DOI:10.17616/R3SB9S, DOI:10.25504/FAIRsharing.uovQrT, DOI:10.25934, r3d100012823 | https://vivli.org/vivli-covid-19-portal-2/, https://doi.org/10.17616/R3SB9S, https://doi.org/10.17616/r3sb9s, https://doi.org/10.25934/, https://dx.doi.org/10.25934/, https://fairsharing.org/10.25504/FAIRsharing.uovQrT, https://doi.org/10.17616/R3SB9S | SCR_018080 | 2026-08-01 12:06:10 | 1532 | ||||||
|
UltraScan Resource Report Resource Website 10+ mentions |
UltraScan (RRID:SCR_018126) | data processing software, data analysis software, software application, software resource | Software package for hydrodynamic data from analytical ultracentrifugation experiments. Features integrated data editing and analysis environment with portable graphical user interface. Provides resolution for sedimentation velocity experiments using high-performance computing modules for 2-dimensional spectrum analysis, genetic algorithm, and for Monte Carlo analysis. | Hydrodynamic data, analytical ultracentrifugation experiment, data editing, analysis, sedimentation velocity experiment, spectrum analysis, genetic algorithm, Monte Carlo analysis | NSF DBI 9724273; NSF DBI 9974819; NSF ANI 228927; NSF TG-MCB 060019T; NSF TG-MCB 070038; NSF TG-MCB 070039; NSF TG-MCB 070040; NSF OCI 1032742; NSF ACI 1339649; NCRR RR022200; NCRR RR 022200 03S1; NIGMS GM120600; San Antonio Life Science Institute ; Howard Hughes Medical Institute ; Robert J. Kleberg Jr. and Helen C. Kleberg Foundation |
Free, Available for download, Freely available | SCR_018126 | 2026-08-01 12:06:18 | 20 | ||||||||||
|
CLIP-Explorer Resource Report Resource Website 1+ mentions |
CLIP-Explorer (RRID:SCR_018128) | data visualization software, data analysis software, service resource, software application, software resource, data processing software | Webserver to process, analyse and visualise CLIP-Seq data. Software tools to process and visualise RNA protein interactions. CLIP-Seq data analysis in Galaxy. Galaxy CLIP-Explorer can process large CLIP-Seq data of eCLIP, iCLIP, and with simple changes to iCLIP workflows also FLASH, and uvCLAP. | CLIP-seq data, RNA protein interaction, Galaxy, data analysis, eCLIP, iCLIP, FLASH, uvCLAP, bio.tools |
is listed by: Debian is listed by: bio.tools is related to: Galaxy is related to: FLASH |
Restricted | SCR_018130, biotools:CLIP-Explorer | https://bio.tools/CLIP-Explorer | SCR_018128 | 2026-08-01 12:05:55 | 2 | ||||||||
|
genomics resource for animal lectins Resource Report Resource Website 1+ mentions |
genomics resource for animal lectins (RRID:SCR_018122) | topical portal, data or information resource, portal | Resource presents information about animal lectins involved in various sugar recognition processes. | Genomic, animal lectin, sugar recognition process | has parent organization: Imperial College London; London; United Kingdom | BBSRC ; Wellcome Trust ; Consortium for Functional Glycomics |
Free, Freely available | SCR_018122 | 2026-08-01 12:06:10 | 3 | |||||||||
|
Schema.org Resource Report Resource Website 1+ mentions |
Schema.org (RRID:SCR_018291) | data or information resource, portal, narrative resource, topical portal, blog | Portal includes vocabulary to assist global response to Coronavirus outbreak. Creates, maintains, and promotes schemas for structured data. | Vocabulary, coronavirus outbreak, schema, structured data |
is listed by: Data and Computational Resources to Address COVID-19 is related to: openMINDS publications metadata model is related to: Google Dataset Search |
COVID-19 | Restricted | https://schema.org/docs/releases.html#v7.0 | SCR_018291 | Schema.org 7.0 | 2026-08-01 12:06:19 | 1 | |||||||
|
Health Data Research UK COVID-19 Initiative Resource Report Resource Website |
Health Data Research UK COVID-19 Initiative (RRID:SCR_018335) | HDRUK COVID-19 Initiative | data or information resource, data repository, storage service resource, portal, service resource, topical portal, disease-related portal | Initiative to mobilize talent and partnerships across United Kingdom to coordinate and connect national data science driven research efforts related to COVID-19 to address wider impact of COVID-19 pandemic.National Institute for Health Data Science for England, Wales, Scotland and Northern Ireland, is championing use of health data to respond to COVID-19. | Health data, COVID-19, United Kingdom, data portal, data set | is listed by: Global Initiative on Sharing All Influenza Data | COVID-19 | Free, Freely available | SCR_018335 | 2026-08-01 12:06:19 | 0 | ||||||||
|
Gene Expression Profiling Interactive Analysis Resource Report Resource Website 5000+ mentions |
Gene Expression Profiling Interactive Analysis (RRID:SCR_018294) | GEPIA | data access protocol, service resource, production service resource, software resource, analysis service resource, web service | Web server for cancer and normal gene expression profiling and interactive analyses. Interactive web server for analyzing RNA sequencing expression data of tumors and normal samples from TCGA and GTEx projects, using standard processing pipeline. Provides customizable functions such as tumor or normal differential expression analysis, profiling according to cancer types or pathological stages, patient survival analysis, similar gene detection, correlation analysis and dimensionality reduction analysis. | Cancer gene expression, normal gene expression, analysis, RNA sequencing, expression data, TCGA project, GTEx project, patient survival analysis, correlation analysis |
is related to: Gene Expression Profiling Interactive Analysis 2 has parent organization: Peking University; Beijing; China |
Cancer | Peking University ; National Natural Science Foundation of China |
PMID:28407145 | Free, Freely available | SCR_018294 | 2026-08-01 12:06:12 | 5635 | ||||||
|
Track-A-Worm Resource Report Resource Website 1+ mentions |
Track-A-Worm (RRID:SCR_018299) | data processing software, data analysis software, software application, software resource | Open source system for quantitative assessment of C. Elegans locomotory and bending behavior. Used for quantitative behavioral analyses to understand circuit and gene bases of behavior. Constantly records and analyzes position and body shape of freely moving worm at high magnification. | Quantitative assessment, C.Elegans locomotory, bending behavior, behavioral analysis, gene, moving worm position, body shape, automated recording | is related to: University of Connecticut; Connecticut; USA | NIGMS R01 GM083049; NIMH R01 MH085927 |
PMID:23922769 | Free, Available for download, Freely available | SCR_018299 | Tracker-A-Worm version 1.0, Tracker-A-Worm version 2.0 | 2026-08-01 12:06:19 | 3 | |||||||
|
Provisional Cell Ontology Resource Report Resource Website 1+ mentions |
Provisional Cell Ontology (RRID:SCR_018332) | PCL | ontology, controlled vocabulary, data or information resource, portal | Collection of ontology of provisional cells determined by experimental methods. | Ontology, provisional cell, experimental method, BioPortal |
is related to: BioPortal is related to: BioPortal Metadata Ontology |
Free, Freely available | SCR_018332 | Provisional Cell Ontology | 2026-08-01 12:06:13 | 3 | ||||||||
|
PlotTwist Resource Report Resource Website 10+ mentions |
PlotTwist (RRID:SCR_018331) | data access protocol, service resource, production service resource, software resource, web service, analysis service resource | Web application for plotting and annotating continuous data. Open source web app for plotting and annotating time series data. Used to inspect data and generate publication quality visualizations. Available options for plotting include lineplot, small multiples and heatmap, summary statistics and inferential statistics. | Plotting continuous data, annotating continuous data, data visualization, time series data, line plot, small multiples, heatmap, statistic, bio.tools |
is listed by: Debian is listed by: bio.tools |
PMID:31929523 | Free, Freely available | biotools:Plottwist, BioTools:PlotTwist | https://github.com/JoachimGoedhart/PlotTwist, https://bio.tools/PlotTwist, https://bio.tools/PlotTwist, https://bio.tools/PlotTwist | SCR_018331 | PlotTwist Shiny | 2026-08-01 12:05:57 | 10 | ||||||
|
CRISPRcasIdentifier Resource Report Resource Website 1+ mentions |
CRISPRcasIdentifier (RRID:SCR_018296) | data processing software, data analysis software, software application, software resource | Software tool providing machine learning approach for identification and classification of CRISPR-Cas systems. Combines regression and classification approaches for improving quality of input protein cassettes and predicting their subtypes. | CRISPR-Cas, Machine Learning, Cas genes, Cas proteins, input protein cassette, predicting subtype, bio.tools |
is listed by: Debian is listed by: bio.tools |
DOI:10.1101/817619 | Free, Available for download, Freely available | biotools:crisprcasidentifier | https://bio.tools/crisprcasidentifier | SCR_018296 | 2026-08-01 12:05:57 | 4 | |||||||
|
Whippet Resource Report Resource Website 1+ mentions |
Whippet (RRID:SCR_018349) | data processing software, data analysis software, software application, software resource | Software tool for analysis of Alternative Splicing events and calculation of weighted transcripts per million values TPM on gene level. RNA-seq analysis method that quantifies AS events of any complexity without loss of accuracy. Used for accurate profiling AS to find misregulation present in human diseases. | Alternative Splicing analysis, alternative splicing, weighted transcripts values, TPM calculation, gene level, RNA-seq analysis, AS event quantification | Canadian Institutes of Health Research ; Canada First Excellence Fund ; EMBO Long-Term Fellowship ; Marie Curie IOF Fellowship |
PMID:30220560 | Free, Available for download, Freely available | SCR_018349 | 2026-08-01 12:06:13 | 9 | |||||||||
|
CORD-19 Explorer Resource Report Resource Website |
CORD-19 Explorer (RRID:SCR_018341) | data or information resource, portal, data access protocol, service resource, topical portal, disease-related portal, software resource, web service | Software tool as full text search engine for COVID-19 Open Research Dataset. Used to explore dataset and identify potential research efforts. | Full text engine, COVID-19 dataset, explore dataset, COVID-19 Open Research, dataset |
has parent organization: Allen Institute works with: COVID-19 Open Research Dataset |
COVID-19 | Free, Freely available | SCR_018341 | 2026-08-01 12:06:13 | 0 | |||||||||
|
Crowdfight COVID-19 Resource Report Resource Website 1+ mentions |
Crowdfight COVID-19 (RRID:SCR_018340) | topical portal, data or information resource, disease-related portal, portal | Initiative from scientific community to put all available resources including highly skilled scientists at service of fight against COVID-19. | COVID-19, COVID-19 researcher, volunteer service, | COVID-19 | Free, Freely available | SCR_018340 | 2026-08-01 12:06:20 | 3 | ||||||||||
|
FoldIndex Resource Report Resource Website 1+ mentions |
FoldIndex (RRID:SCR_018390) | software resource, data access protocol, service resource, web service | Web tool to predict whether given protein sequence is intrinsically unfolded. Algorithm for predicting ordered and disordered regions in protein based on its primary structure amino acid sequence. Graphic web server to predict if given protein sequence is intrinsically unfolded implementing algorithm of Uversky and co-workers, which is based on average residue hydrophobicity and net charge of sequence. | Protein sequence, intrinsically unfolded sequence, protein ordered region, protein disordered region, amino acid structure, protein region prediction | Israel Ministry of Science and Technology ; Divadol Foundation ; Minerva Foundation |
DOI:10.1093/bioinformatics/bti537 | Free, Freely available | SCR_018390 | 2026-08-01 12:06:13 | 4 | |||||||||
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Measurement Control And Data Analysis Software Resource Report Resource Website 1+ mentions |
Measurement Control And Data Analysis Software (RRID:SCR_018309) | MES | data processing software, data analysis software, software application, software resource | Software package for measurement control and analysis by Femtonics Ltd. Designed in MATLAB and used in field of cellular and network imaging. New version offers new scanning features and improved overall usability. | Measurement control, measurement analysis, Femtonics Ltd, cellular imaging, networking imaging, data scanning | uses: MATLAB | Restricted | SCR_018309 | 2026-08-01 12:06:12 | 6 | |||||||||
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Jupyter Notebook Resource Report Resource Website 100+ mentions |
Jupyter Notebook (RRID:SCR_018315) | software resource, web application | Open source web application to create and share documents that contain live code, equations, visualizations and narrative text. Used for data cleaning and transformation, numerical simulation, statistical modeling, data visualization, machine learning. | Create and share document, live code, equation, visualization, narrative text document, data cleaning, data transformation, numerical simulation, statistical modeling, data visualization, machine learning |
is used by: NWB Explorer is related to: Jupyter-client is related to: MERMAID is related to: Docker based GPU enabled Jupyterlab is related to: JupyterLab |
Free, Available for download, Freely available | SCR_018315 | 2026-08-01 12:05:57 | 310 | ||||||||||
|
O Resource Report Resource Website 1+ mentions |
O (RRID:SCR_018394) | data visualization software, data or information resource, 3d visualization software, image, software application, data processing software, software resource, 3d spatial image | Software for visualization of macromolecular structures, atomic coordinates, and 3D intensity maps, and for building macromolecular structures. | Macromolecular structure, atomic coordinate, protein structure, 3D visualization, model building, atomic modelling | has parent organization: Uppsala University; Uppsala; Sweden | DOI:10.1107/s0108767390010224 | Free, Available for download, Freely available | SCR_018394 | 2026-08-01 12:06:20 | 1 | |||||||||
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COVID-19 research data on Figshare Resource Report Resource Website |
COVID-19 research data on Figshare (RRID:SCR_018277) | topical portal, data or information resource, portal | Portal to discover COVID-19 open research data on Figshare. Figshare collection of COVID-19 related research data. | COVID-19, COVID-19 data, open research data | is listed by: Data and Computational Resources to Address COVID-19 | COVID-19 | Free, Freely available | SCR_018277 | 2026-08-01 12:06:19 | 0 | |||||||||
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SPCM Resource Report Resource Website 1+ mentions |
SPCM (RRID:SCR_018310) | data acquisition software, software application, data processing software, software resource | Software tool as instrument software for SPC- and DPC Modules by Becker and Hickl GmbH. | Data acquisition, instrument software, Becker and Hickl GmbH | Restricted | SCR_018310 | 2026-08-01 12:06:19 | 4 |
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